Drel013376.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila rellima
Gene Symbol
Paxbp1
Assembly
GCA_035043635.1
Location
JAWNMV010000811.1:10877001-10880744[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.8e-28 5.4e-24 85.3 0.7 4 272 629 836 626 838 0.93

Sequence Information

Coding Sequence
ATGTCCCTGTTTCGCAAACCGAAGAAAATACAGCGGCGCGTATTCTCCAGCAATgcggacgacgacgacaacgcgACGCCCATGGAGGTTGACGGGGTCTTGGAAACACCCCCTCCGCCCATAATTTCGCTATCCGGCAAACGggataaagataaaaataagaaaactatTAAGCAATCAGATGACAATGGCAAGCCCAAGGCATTACTTAGTTTTGCTGATGATGAGGACGATGGGGAAGTGTTTCAAGTGCGTAAATCATCGCACAGCAAGAAAGTCATGCGAATGCTGGACAAGGAGCGACGTAAGAAGAAGCGAGAGGAGCGAGCCGAGCACACTGGACACAGCGGACACATGGGTTTTGAGAATGGTAGTACTCCACAGCGTTTAGAGTCGTCCAGTGCTATTGCTTCGGGTGCTGGTACTGCCAATTCTAGTAGATATAAAAGTACGTCCATAGCGAGTGACGATGCGAGCGTACagagtaaaagtaaaaagtgTGATAATGATATGATCCAAACCGAAATACGCACAGACGACTTTGTGCTTGTGGTCAAGAAGTCAGAGACTCCCGATGTTGTTTTAAACGGACGTTCCGCTCTTTGTGCTGGCCGGGATGATATGAGCGACGATGAACGCTTAGACGATAGGGATAGTGATAAAGCTGGCCACCGTTTCTCAAAGCCCGAGCAATTGAAACAAATGCTAGAGAGCGGCTCAATTCCGGATGCAGCTATGATACATGCGGCACGTAAGCGCAGAcagcgagcgagagagcagGGTGCCGGTGACTATATACCAATTGAGGAGCCCAAAGAGCCACCGAAGCTTAGCACACGTTTGCCACGTGAAGATGTCGAGGGGGATCAATCAGACGATGAGGAGCGCATGGATATGAACGACATAACCGGTCGGAAGGAGCGTGAAGAGCGTCGCGAACAATTCTATGCCGTTGAGAATGATTTAACCGAGGAAGATTCCGATCGCGAAATGCACGAGTGGGAGAATCAACAGATTCGTAAAGGTGTCACTGGCGCTCAATTAGTGCACGCACAGCATGAAACAGTACTGTCACGTTTCATGATTAAACCTGCAGCGCCCAGTGGCAGTGGAGCCTTGGAACTGGAGGATTTGGTGCCACCATCAACTTCAACACTGCTGGAGCAGGCCTATGCAAAGAACATCTTCGACAAAAGCAGTACATTATCATCGGTGATGCGATCGAGTTTCCCCAAGCCCAAAAAGGAGAAAGCTAAAGCAACAGCTCTGCGGACGCCACAAGAAATGCGGACTTCGATCACAACGCGCCTCAATGAGCTGCAGGAACGCAACGACGATCATAGTGCCAGCATAGCACGCATTGCAGCCGACCTCAAATCATTGAAACTACAACAACTCGAGTGTCAGCAGAATGCGCCAACGGCAGCGGCTAAATACAAGTTCTATCAAGAAGTCAAGTGCTATGTTAATGATTTAGTCGATTGTTTGGCAGCTAAATCGCCGAACATCAACGAGCTGGAAAAACGCTCGCTGCAGCAATACGGCAAGAGTCAACGTTATCTGGTCAATCGGCGTCGGCAGGATGTGCGCGATCAGGCCAAGGAAATGGCGGAAGCATCcaAAGCTATTTCAGCTGCTGCACGACGAACGCCGGAATACGAGGAGCAAGTGCGTAGGGCTGCTGAGCGGGAGGGTCGTCGCACGCGTCGGCGTTGTGAACGAGAGCGCAACGATTTATTAGCCTCTCACTTGGATGGCATGTCCAGCGACGATGAGATTTCCGATCAACAGCAGGAACAATGTCTGACGGCCACGGCTCAAATCGAAACAGAAGCAGCGGAAGCTTTTGAAGATGTCACCGATGATTTCTGCAAAATCGAGCTGATACTTGTTAAGTTCTTTGCTTGGCGCAAAACGGATATGAATTCATATCAGGACGCGTTCGTTAGTCTCTGTCTGCCCAAACTGCTGGCGCCAATTGTGCGTCACGAGATGCTTCTATGGTCACCGCTGCTTGAAGAATACATGGATATTGAGACAATGCATTGGTATCAAGCCTGCATGTTGTATGCATTCCAGCCAGATGAAACCGTTGAACGTCTAAAGCAGGATCCCGATGTTAACCTGGTGCCCTCGCTTATAGAAAAGATTGTGCTCCCCAAAGTGAACTCTCTAGTTACAGAATGCTGGGATCCATTGTCAACGACGCAAACGTTGCGTCTTATTGGGTTTATCAATCGCTTGGGCCGAGAATTCCCACTTCACAGCAGCAATAAGCAACTGAGAAAGCTTTTTGAGTCAATTATGGAGCGTATGCGTCTGGCACTCGAAAATGATGTATTCATACCAATTTTTCCTAAGCAGGTGCAGGAAGCCAAGGGATCGTTTTTCCAGCGTCAATTTTGTAGTGGACTGAAACTATTTCGAAATTTTCTTAGTTGGCAGGGAATTCTGGCAGACAAACCCTTGCGGGAACTAGCCATAGGAGCACTTCTAAATCGCTATCTTCTGTTAGCCATGCGCGTGTGTCCGCCGAATGATGCCATTGGCAAGGCCTATATAATTGTGAATACCCTGCCAACTGTTTGGTTGGTGCCCAACAGCGAAACGCTAAAGAATATGGAGCTATTCATTACCTATATTCGACAAACGTTGGAAAATTGTGATGCTAACAATCCActgtttatgcaATCCAGTGAGAAGGCTAAGCAAATACTACAAAGACTACATAGCTTATAA
Protein Sequence
MSLFRKPKKIQRRVFSSNADDDDNATPMEVDGVLETPPPPIISLSGKRDKDKNKKTIKQSDDNGKPKALLSFADDEDDGEVFQVRKSSHSKKVMRMLDKERRKKKREERAEHTGHSGHMGFENGSTPQRLESSSAIASGAGTANSSRYKSTSIASDDASVQSKSKKCDNDMIQTEIRTDDFVLVVKKSETPDVVLNGRSALCAGRDDMSDDERLDDRDSDKAGHRFSKPEQLKQMLESGSIPDAAMIHAARKRRQRAREQGAGDYIPIEEPKEPPKLSTRLPREDVEGDQSDDEERMDMNDITGRKEREERREQFYAVENDLTEEDSDREMHEWENQQIRKGVTGAQLVHAQHETVLSRFMIKPAAPSGSGALELEDLVPPSTSTLLEQAYAKNIFDKSSTLSSVMRSSFPKPKKEKAKATALRTPQEMRTSITTRLNELQERNDDHSASIARIAADLKSLKLQQLECQQNAPTAAAKYKFYQEVKCYVNDLVDCLAAKSPNINELEKRSLQQYGKSQRYLVNRRRQDVRDQAKEMAEASKAISAAARRTPEYEEQVRRAAEREGRRTRRRCERERNDLLASHLDGMSSDDEISDQQQEQCLTATAQIETEAAEAFEDVTDDFCKIELILVKFFAWRKTDMNSYQDAFVSLCLPKLLAPIVRHEMLLWSPLLEEYMDIETMHWYQACMLYAFQPDETVERLKQDPDVNLVPSLIEKIVLPKVNSLVTECWDPLSTTQTLRLIGFINRLGREFPLHSSNKQLRKLFESIMERMRLALENDVFIPIFPKQVQEAKGSFFQRQFCSGLKLFRNFLSWQGILADKPLRELAIGALLNRYLLLAMRVCPPNDAIGKAYIIVNTLPTVWLVPNSETLKNMELFITYIRQTLENCDANNPLFMQSSEKAKQILQRLHSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00553721;
90% Identity
iTF_00608434;
80% Identity
-