Basic Information

Gene Symbol
grh
Assembly
GCA_003286085.2
Location
NW:19463143-19502261[+]

Transcription Factor Domain

TF Family
CP2
Domain
CP2 domain
PFAM
PF04516
TF Group
Beta-Scaffold Factors
Description
This family represents a conserved region in the CP2 transcription factor family.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 1.9 1.3e+04 -5.2 1.5 121 135 180 194 172 206 0.42
2 4 0.19 1.3e+03 -1.9 1.8 80 123 469 522 431 537 0.49
3 4 0.096 6.8e+02 -1.0 0.4 77 112 756 794 748 804 0.61
4 4 3.3e-63 2.3e-59 200.0 0.4 24 221 920 1112 906 1114 0.94

Sequence Information

Coding Sequence
ATGTCCACATCCACCGCCACAACGAGCGTCATCACGTCCAACGAGCTCTCGTTGTCCGCCCACGGGCACGCCcacgcgcacacacactcccACACGCACAGCCACGGCCACGGGCACTCGCTGCACCAGCACCCCCACAGTCGGATCGGAGTGGGCGTCGGAGGAGTCGGCGTAGGAATCGGTGtaggagtgggagtgggagtccTTAGTGACGCCTCTCTCTCACCCATCCAGCAgggaggaggcggcggcggcggaggcgcCAACAGTTCACCCCTGGCGCCCAACGGAGTACCCCTGCTGACCACCATGCACCGCTCCCCGGACAGTCCCCAGCCGGAGCTGGCTACCATGACGAACGTCAACGTCCTGGACCTGCACACAGACTCCTCGAAGCTGTACGACAAGGAGGCGGTCTTCATCTACGAGACGCCCAAGGTGGTGATGCCCGCCGACGGTGCCGCGGACGATGCTCATGCCATCGATGCACGGATCGCGGCCCAGCTGGGCACACAGcacgcccagcagcagcagcagcagcaacaacaacaacagcagcagcagcagcagacggaGCACCAGCCGCTGGCCAAGATCGAGTTCGACGAGAACCAGATCATCCGCGTCGTGGGACCGAacggagagcagcagcagatcatTTCGCGGGAAATCATCAACGGGGAGCATCACATCTTGTCGCGGAACGAGGCCGGAGAGCACATCCTCACGCGCATCGTCAGCGATCCCTCGAAGCTGATGCCCAACGACAATGCGGTGGCCACCGCCATGTACAACCAGGCCCAGAAAATGAACAACGACCACCAGGCCGTCTACCAGacctcgcccctgcccctggacGCCTCCGTGCTGCACTACAGCAACGACAACAGCAACGTGATCAAAACGGAGGCGGACCTCTACGAGGACCACAAGAAGCATGCGGCCGGCGGGGGCTCCATCATCTACACCACCTCCGACCCGAACGGCGTCAATGTGAACGTGAAACAGCTGCCCCATTTGGCCGTGCCGCAGAAGCTCGACCCGGACCTCTACCAGACGGACAAGCACATCGATCTGATCTACAACGACGGCAGCAAGACCGTCATCTACTCCACCACCGACCAGAAGGGCCTCGAGATCTATTCGGGCGGCGACATCGGCAGCCTCGTCTCCGACGGCCAAGTGGTGGTCCAGGCGGGCCTCCCCTATGCCACCACCACCAGTGCCACAGGCCAGCCCGTCTACATCGTGGCCGATGTCAGCGAGGACCATTTACAAAGTGGAAAGCTCAATGGCCAGACCACACCCATCGATGTCTCGGGCCTATCGCAGAATGAGATCCAAGGCTTTCTGCTCGGCTCCCACCCCTCGTCATCGGCCTCGGTCAGCACCACTGGCGTTGTCTCCACCACCACAATCtcgcagcaccaccagcagcaacagcagcagcagcaacagcaacagcaacaacaacagcagcagcagcatcccgGGGACATTGTGAGTGCCGCAGGCGTGGGGAGTGCAGGCTCCATTGTCTCGACGGCggtgcaacagcagcaacagcaacaacagcagcagcagcagcagctgatcACCATCAAAAGAGAGCCGGAGGATCTGCGCAAGGATCCGAAGAACGGTAACATTGCCGGAGCGGCGGCAGCGAACGGCGGCGCGGGTTCGGTCATAACGCAAAAGATCTTGCACGTGGATGCATCGCCACCAGCCGACGAAGCTGAGATTAGCGAGATTAGCCACAGACCCAGCAGCACAACCTGCACGATCAgtaccacaaccacaaccagaaccagaaccaccagcagcagcagtagtaGTCCTGCTACCGAACTAGAGATGTATGCTACCACGGGCGGCACACAGATTTACCTACAGACCTCACATCCCAGCACGGCCAGCGGCGCgggaggaggcggcggcggcggcggcggcgggggTGGATCTGGAGGAGCCGGATCGCTGCAGGCACAGAGCCCCAGTCCGGGGCCGTACATAACCGCCAACGACTATGGGATGTACACGGCCAGCCGACTGCCGCCCGGCCCCCCGcccaccaccgccaccacctTCATAGCGGAGCCCTACTACCGCGAGTACTTCGCGCCGGACGGACAGGGCGGCTACGTGCCCGCCTCCACGCGCACCATCTACGGAGACGTGGACGTTTCGGTGTCTCAGCCGGGCGGAGTGGTCACCTACGAGGGCCGCTTCACCGGCAACGCCCCCCCGCCCACCACAACCACGCTGCTAACGAGCAGCGTCAGCgtgcaccaccagcagcagcagcagcagcaacagcaacagcaacagccccaacaccagcagcacctccaccaacagcagccacagcagcagcagcaacaccatcACCCGCAGGACGGCAAGGGCGGCGGCGGGACGCCACTCTATGCCAAGGCCATCACGGCGGCGGGACTCACCGTGGATCTGCCCAGTCCCGACTCGGGCATCGGCACGGACGCCATTACGCCGCGGGATCAGACCAACATACAGCAGTCCTTCGATTACACGGAACTGTGCCAGCCGGGCACCCTCATCGATGCCAATGGCAGCATACCCGTGTCCGTGAACAGCATCCAGCAGCGGACAGTGGTCCATGGCAGCCAGAACAGTCCCACCACCTCCCTGGTGGACACGAGCACAAACGGTTCGACGCGTTCGCGGCCCTGGCACGACTTTGGCCGCCAGAACGATGCcgataaaatacaaataccaaaAATATTCACAAATGTTGGCTTCCGATATCACCTGGAGAGCCCCATCAGCTCGTCGCAGAGGCGCGAGGACGATCGCATCACCTACATCAACAAGGGCCAGTTCTACGGGATCACGCTGGAGTATGTGCACGATGCGGATAAGCCCATCAAGAACACGACGGTTAAGAGTGTGATCATGCTCATGTTCCGCGAGGAGAAGAGCCCCGAAGATGAGATCAAGGCCTGGCAATTCTGGCACAGTCGCCAGCATTCCGTAAAGCAAAGAATCTTGGATGCAGATACGAAGAACTCGGTTGGCCTGGTTGGCTGCATCGAGGAAGTGTCGCACAATGCCATCGCCGTTTACTGGAATCCGCTGGAGAGCTCCGCCAAGATCAACATTGCGGTGCAGTGCCTGAGCACGGATTTCAGCAGTCAAAAAGGAGTCAAGGGCCTGCCGCTGCACGTACAAATCGACACATTCGAGGACCCCAGAGATGCGGCCGTCTTCCACCGGGGCTACTGTCAGATAAAGGTCTTCTGCGATAAGGGCGCCGAGCGCAAAACGCGCGATGAGGAGCGACGGGCCGCCAAGCGGAAGATGACGGCCACCGGCAGAAAGAAGCTGGATGAGCTCTACCATCCGGTGACAGATCGGTCCGAGTTCTATGGCATGCAGGACTTTGCCAAGCCGCCGGTGCTCTTCTCGCCCGCCGAGGACATGGAGAAGAGCTTCTACGGCCATGAGACTGACTCGCCGGACCTGAAGGGGGCCTCGCCGTTCCTGCTCCACGGCCAGAAGGTGGCCACGCCGACGCTCAAGTTCCACAATCACTTTCCGCCCGACATGCAGACCGATAAAAAGGATCACATACTGGACCAGAACATTATGACCAGCACACCCATGACCGACTTCGGTCCGCCCATGAAGCGGGGACGCATGACGCCGCCAACCTCGGAGCGCGTGATGCTCTACGTGCGGCAGGAGAACGAGGAGGTGTACACCCCGCTGCATGTGGTTCCCCCCACCACAATTGGCCTGCTGAATGCGAttgaaaacaaatacaaaatctCAACAACGAGCATAAATAACATTTATCGCACAAACAAGAAGGGGATTACTGCGAAAATTGACGATGATATGATATCGTTCTACTGCAATGAGGACATCTTCTTGCTGGAGGTGCAGCAGATCGAGGACGATCTGTACGATGTGACGCTGACGGAGCTGCCCAACCAGTAG
Protein Sequence
MSTSTATTSVITSNELSLSAHGHAHAHTHSHTHSHGHGHSLHQHPHSRIGVGVGGVGVGIGVGVGVGVLSDASLSPIQQGGGGGGGGANSSPLAPNGVPLLTTMHRSPDSPQPELATMTNVNVLDLHTDSSKLYDKEAVFIYETPKVVMPADGAADDAHAIDARIAAQLGTQHAQQQQQQQQQQQQQQQQTEHQPLAKIEFDENQIIRVVGPNGEQQQIISREIINGEHHILSRNEAGEHILTRIVSDPSKLMPNDNAVATAMYNQAQKMNNDHQAVYQTSPLPLDASVLHYSNDNSNVIKTEADLYEDHKKHAAGGGSIIYTTSDPNGVNVNVKQLPHLAVPQKLDPDLYQTDKHIDLIYNDGSKTVIYSTTDQKGLEIYSGGDIGSLVSDGQVVVQAGLPYATTTSATGQPVYIVADVSEDHLQSGKLNGQTTPIDVSGLSQNEIQGFLLGSHPSSSASVSTTGVVSTTTISQHHQQQQQQQQQQQQQQQQQQHPGDIVSAAGVGSAGSIVSTAVQQQQQQQQQQQQQLITIKREPEDLRKDPKNGNIAGAAAANGGAGSVITQKILHVDASPPADEAEISEISHRPSSTTCTISTTTTTRTRTTSSSSSSPATELEMYATTGGTQIYLQTSHPSTASGAGGGGGGGGGGGGSGGAGSLQAQSPSPGPYITANDYGMYTASRLPPGPPPTTATTFIAEPYYREYFAPDGQGGYVPASTRTIYGDVDVSVSQPGGVVTYEGRFTGNAPPPTTTTLLTSSVSVHHQQQQQQQQQQQQPQHQQHLHQQQPQQQQQHHHPQDGKGGGGTPLYAKAITAAGLTVDLPSPDSGIGTDAITPRDQTNIQQSFDYTELCQPGTLIDANGSIPVSVNSIQQRTVVHGSQNSPTTSLVDTSTNGSTRSRPWHDFGRQNDADKIQIPKIFTNVGFRYHLESPISSSQRREDDRITYINKGQFYGITLEYVHDADKPIKNTTVKSVIMLMFREEKSPEDEIKAWQFWHSRQHSVKQRILDADTKNSVGLVGCIEEVSHNAIAVYWNPLESSAKINIAVQCLSTDFSSQKGVKGLPLHVQIDTFEDPRDAAVFHRGYCQIKVFCDKGAERKTRDEERRAAKRKMTATGRKKLDELYHPVTDRSEFYGMQDFAKPPVLFSPAEDMEKSFYGHETDSPDLKGASPFLLHGQKVATPTLKFHNHFPPDMQTDKKDHILDQNIMTSTPMTDFGPPMKRGRMTPPTSERVMLYVRQENEEVYTPLHVVPPTTIGLLNAIENKYKISTTSINNIYRTNKKGITAKIDDDMISFYCNEDIFLLEVQQIEDDLYDVTLTELPNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00580456;
80% Identity
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