Dpau007466.1
Basic Information
- Insect
- Drosophila paulistorum
- Gene Symbol
- -
- Assembly
- GCA_018152135.1
- Location
- JAECXG010000822.1:28317380-28323245[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00037 0.028 14.9 2.0 1 23 158 180 158 180 0.97 2 13 0.77 60 4.5 1.6 3 23 188 209 187 209 0.93 3 13 8e-05 0.0062 17.0 2.8 1 23 366 388 366 388 0.98 4 13 0.0012 0.091 13.3 1.9 3 23 764 784 763 784 0.92 5 13 0.047 3.7 8.3 1.4 1 23 790 813 790 813 0.98 6 13 1.3 1e+02 3.7 1.6 2 23 850 871 849 872 0.92 7 13 0.003 0.23 12.1 0.7 1 23 893 916 893 916 0.97 8 13 0.00091 0.071 13.7 0.6 1 21 1187 1207 1187 1210 0.90 9 13 0.062 4.8 7.9 7.4 1 23 1222 1244 1222 1244 0.98 10 13 1.3e-05 0.001 19.5 2.2 1 23 1249 1272 1249 1272 0.97 11 13 0.0006 0.047 14.3 4.0 1 23 1285 1310 1285 1310 0.95 12 13 4.1e-05 0.0032 17.9 0.6 1 23 1315 1337 1315 1337 0.97 13 13 3.2e-05 0.0025 18.3 0.2 1 23 1344 1367 1344 1367 0.97
Sequence Information
- Coding Sequence
- ATGCCAATGCCAAGTCAAATCGAGAGAAGAAGCAACGAAAAGGCGAAAGCGGAGCTTCAGTTCATGAAGTCCAATGCAAATTACGAATACGTTTGTCGCTGCTGTCTCAAATCAGACGCTGATTTCGTTCAACTGGATACGTTGATGGTATCACGGAGCTTGGATGCAAATGCAGAATCGGATAAAATCCCTTTATTGCGTTGCTTACTCTTTTGCATACGCACGGATAATAAACCCGATTTGCCACAATTAATCTGCACGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTTGCCGTAAACTATGTTCTGATAAGCCAACACATTCGCGTCTTGGAGTGCAGCTTAATGGCAATTTGAGACATGAGACGGCGCCAAAGGAACTCACTTCACCAGACAGCAAGGCGAGATCGCACAAGTCGGGGAATATTCGCCATGAATGTAAAATTTGTGGCACCGTGGTACACAATCGTATGGAACTTAAGCAGCACATACGCCTGCACAGAGATACAATCATTCAGAATTGCTCACTGTGCATTTTTAGTACGATCAAGCAGAGCCATCTGATGGAACACTATCGAGTGATGCACAATCTAACAACAGCTCAGGCCGAAGATCGCATTAATTTGGAGCAACTTGAACAAAAACTGCAGGAAGGTCCTAAAGTTTGCACTCTTGAGGATATTGAAATGCTTATACCGACTGTATTGACACCCGAGGATTATGCTCAGCCAAAGAGTGTATATAACATTGTGCCACAAGCGATGCCCAATAAGGAGACAAGTGCGAATAATGTTAGCATTGGCACGGAATTCCTTGTCATGCCTGATGGATCACTACAACAAGTGAATGGTGGTGGAGTCCTCTTTGAATATATCGATGACAGCAAACGTAATGTGGCACCCACGGGCAATTTAAATTTACAAGCTCTTCTTGGAAATGACAACCTATCCGTCGATCCCATGGACATAGATATTAATGAGCTTATTGTGGAGGAGAATCTACCACAAATAAAAACTAAGCCAAGACCCCTAAAAATGGCAGCTGCTACTTTCAAGCACAAATGCACAGTTTGCACGAAATCATTTCCCACTTTGGGCCGCTTAAAATCTCATCAATTAACTCACAGTAATTTACCCAAATTTCATTGCGATCAGTGTAATTTCTTTACGCTGCTTAGCTCTGATCTTGCCTATCATCATAGAGTAATGCATCAGGAGCCGCCGACACCGGCCCCAGCTGCAGCAACTGCCCCGGCTCCAGCACCGGCTGTAGAACAGGGTGAAATGTTATCATGCGATCTGTGCCTGTTCGAGACAAGGATATCAAGTGAGCTGTATGACCATTATACTGACAAGCACATGGTCCGTCCCACAGAGGTGCAATTGCGCCCTGCTTGTTGGTCTGCTGACGCGGAGACGGCAATCCCTCAACTGCTGGCGGATCAAGGTCAAAATATTGTTAATCCTTATCCAGTGCCTGTACAGCCAATTCTTCCAGAAACCGCCACAAATATTATAATCCACCAGCCGGCACAGGCGAATACAACAGCAACCATAACACCAATGGGCGATATCAGTGTGGTTGTTGATGCAACACCATTATTTTTTCCCAATGGCACGCAAACAGCTGTGACTACAGTTGCCCCACTAGCACTAGAACCACCACCACCACCATCACCACCTGCACCACAACTGCAAGCTTCCACAGTTCCTCCAGCTATTGTGGAGAATAGCACTATCGATAGTACCAACACCACCAACACATTTGTTGCAGCATTTCCAGAAATCTCAGCCAACGAGAATCTTGACCAGACATCTGAGCCAACTATTCCGCCTATCCCGAATCCAAATTTACCATCAACTTTTGGCGATATGCAAGACTTTATCGATAATACAGATGTTGCAGCCATATGCACCATACCAGCGGATGGTATGCCTGTTGTTGATGGCGATGATATAGTTATTGATAATAATAACATAAGCTTAGATTTTGATGCCGAAAATCTCTTTGGCGAATTCGAAGAGGAGGAAGAGGGTGGTGGAGAGGCAGTGGTTGGTGGTCAGAATGATGTGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAGACATTTGCAAAAACCATATTGCATCTATTGCAACAAAAAGTTTACCAGCCAATACAAGTTCGAGAATCATATGTTCGTTCATAGGGGTCTGGCTCCCTATCGATGTGAGTTGTGCACAAATCTTTACAATATGAAACGTCTACTTATACGGCATTATAAGACCGTACACAAACGCATGCCCACCCGCGATATGGTCCAGGCAAAGGGAGATAAAATAACAGTAGCTCGTTCAAATAAGGAAACCATCCAGGTCGAGGTCAATAAAGATCCAATGCTTATGTGCGCCAAATGTCCATTTGAGTGTGAGTCGGATGCGGATATGAAAAAGCATTTAAATGCTCATCATGGCATAAATGATGGTGTTTCCCTACATGCCAATGAAGTGTTTATTATACGTAAATTACCATATGAGTGCCCACGTTGTATACGTTCGTTTGCTGCCAAACGGACATTAACACGTCATTTACAGCGTAGTCACCTGGTGGACACCATAATTGAGCTAACAAGTCCAGCGTCACCAAACCAAACCCAAACCAATGCGGTGGCAAACGAAACTGTGCCATTGAGCAATGCCGAAGATGCCGCCGCAGAAAAGGAAGCTGACACACCGATAGCGCTTCCTGTTGCGGATGACACAGCGATGGTTCCCGAAGCTGATGACACAGCTATGGTTCCCGTTGCTGCTGACACATTGATGGGGTCTGCTGTTGCTCCTAATGCTGAAATAGAATGCGAAACCACCGATACACTCGTTCAAAGTGAGAAAGAGGCTGAAGGTGAAGCTGCTGCTGCAGCAGTGCAACAAAATGAACCGGCGGCTTCATCTACAGCCAACTTGGAGCCATCAACTTTGGAAGTAAAGCCAACTGGAGTTACTACTGCTACTACTAACACGACTACAACTACAACTACAGCGGCTCCGGTTACAGCACCAGCTTCACCAACAGTAACCACAGCTTCTACATCTTCAACAATTTTTAATACACCAACACACTTCGATTTCGATTATGATTTTATGGGTGATAGTACGTCTACGCCCAATGGTAACATCAATGCCCCAAATCCTGATTCCAACAATACCAATACCAATCCCAGCAGTACTACCACTACTACAAGCAATAACAATAATAACAACAACAACACTACTACAACAGATGGTTATACACCAGCAGCAGCCGAAGTGCTTCCCAGTCATGTACTCAATGGCAGTGACAAGTTATTAACTGCCGCCACCATGGAGCCATCACCCATTAAGGACGGACGATTGCGTCTTCCACGCACTCCGATCTTTGTTTGCAAATTGTGCAATAAGACATTCGATGAACTAAGTAAACTGGCTAAACATGAAACCGATATGCATTCTGGCGGAGAGCCACGTCGTGTTGTCTTTCAGCACAAGTGTTCCACATGCCATGCAACCTTCCGTACCCTTACATTGCTGAAGTTTCACATGAAACGACATTTGGCACGCCGATTTCAATGCAACCGCTGTCCCAAGTGCTTCATCAAGAAGCCGGAATTGGAGCGACATATCTTAATGAAGCACGCAGAGAAACATGACATGAGCATCAACGACAAAGCCTTCAGATGCTCACTGGATGGATGTACAAAGACGTTTAATTTTAAGCATCATCTGGTTCGTCATCAAAATGCCGGGCATCTGAAGGTTCGTCATATCTGCAATGTTTGTGGAAAAGAGATGATAAATAGTTTCAATTTGAGAGCTCATATGCGGATTCACAAAGGCAATGGTCAATCGTACAAATGTCCGAATTGTGATAAAACCTACGTGCGACGCGGACCGCTTCGTCTACATGCTCGTCAAGCCCATCAACTTGAGCTAACTGAAAGCGATTGGGCCGGAATGTTATGCAATAATGTTCGCTCCAACAATTTGCACGTGAAAAAGCCTTCGCGTGCTAAGAAAACTACAGAGGCACCAGAAGCCGCCGTCTAA
- Protein Sequence
- MPMPSQIERRSNEKAKAELQFMKSNANYEYVCRCCLKSDADFVQLDTLMVSRSLDANAESDKIPLLRCLLFCIRTDNKPDLPQLICTXXXXXXXXXXXXXXXXXXXXXXLCRKLCSDKPTHSRLGVQLNGNLRHETAPKELTSPDSKARSHKSGNIRHECKICGTVVHNRMELKQHIRLHRDTIIQNCSLCIFSTIKQSHLMEHYRVMHNLTTAQAEDRINLEQLEQKLQEGPKVCTLEDIEMLIPTVLTPEDYAQPKSVYNIVPQAMPNKETSANNVSIGTEFLVMPDGSLQQVNGGGVLFEYIDDSKRNVAPTGNLNLQALLGNDNLSVDPMDIDINELIVEENLPQIKTKPRPLKMAAATFKHKCTVCTKSFPTLGRLKSHQLTHSNLPKFHCDQCNFFTLLSSDLAYHHRVMHQEPPTPAPAAATAPAPAPAVEQGEMLSCDLCLFETRISSELYDHYTDKHMVRPTEVQLRPACWSADAETAIPQLLADQGQNIVNPYPVPVQPILPETATNIIIHQPAQANTTATITPMGDISVVVDATPLFFPNGTQTAVTTVAPLALEPPPPPSPPAPQLQASTVPPAIVENSTIDSTNTTNTFVAAFPEISANENLDQTSEPTIPPIPNPNLPSTFGDMQDFIDNTDVAAICTIPADGMPVVDGDDIVIDNNNISLDFDAENLFGEFEEEEEGGGEAVVGGQNDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPTRDMVQAKGDKITVARSNKETIQVEVNKDPMLMCAKCPFECESDADMKKHLNAHHGINDGVSLHANEVFIIRKLPYECPRCIRSFAAKRTLTRHLQRSHLVDTIIELTSPASPNQTQTNAVANETVPLSNAEDAAAEKEADTPIALPVADDTAMVPEADDTAMVPVAADTLMGSAVAPNAEIECETTDTLVQSEKEAEGEAAAAAVQQNEPAASSTANLEPSTLEVKPTGVTTATTNTTTTTTTAAPVTAPASPTVTTASTSSTIFNTPTHFDFDYDFMGDSTSTPNGNINAPNPDSNNTNTNPSSTTTTTSNNNNNNNNTTTTDGYTPAAAEVLPSHVLNGSDKLLTAATMEPSPIKDGRLRLPRTPIFVCKLCNKTFDELSKLAKHETDMHSGGEPRRVVFQHKCSTCHATFRTLTLLKFHMKRHLARRFQCNRCPKCFIKKPELERHILMKHAEKHDMSINDKAFRCSLDGCTKTFNFKHHLVRHQNAGHLKVRHICNVCGKEMINSFNLRAHMRIHKGNGQSYKCPNCDKTYVRRGPLRLHARQAHQLELTESDWAGMLCNNVRSNNLHVKKPSRAKKTTEAPEAAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00618659; iTF_00503481; iTF_00612296;
- 90% Identity
- -
- 80% Identity
- -