Dequ007353.1
Basic Information
- Insect
- Drosophila equinoxialis
- Gene Symbol
- -
- Assembly
- GCA_018150345.1
- Location
- JAECWI010000001.1:4407034-4412906[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00056 0.044 14.3 1.2 1 23 158 180 158 180 0.97 2 13 0.66 53 4.7 1.6 3 23 188 209 187 209 0.93 3 13 2.7e-05 0.0021 18.5 1.9 1 23 366 388 366 388 0.98 4 13 0.67 53 4.7 0.1 9 23 690 704 688 704 0.94 5 13 0.04 3.2 8.5 1.4 1 23 710 733 710 733 0.98 6 13 1.1 92 3.9 1.6 2 23 770 791 769 792 0.92 7 13 0.0026 0.2 12.3 0.7 1 23 813 836 813 836 0.97 8 13 0.00078 0.062 13.9 0.6 1 21 1024 1044 1024 1047 0.90 9 13 0.053 4.2 8.1 7.4 1 23 1059 1081 1059 1081 0.98 10 13 1.1e-05 0.0009 19.7 2.2 1 23 1086 1109 1086 1109 0.97 11 13 0.00051 0.041 14.4 4.0 1 23 1122 1147 1122 1147 0.95 12 13 3.5e-05 0.0028 18.1 0.6 1 23 1152 1174 1152 1174 0.97 13 13 2.7e-05 0.0022 18.5 0.2 1 23 1181 1204 1181 1204 0.97
Sequence Information
- Coding Sequence
- ATGCCAATGCCAAGTCAAATCGAGAGAAGAAGCAACGAAAAGGCGAAAGCGGAGCTTCAGTTCAAGAAGTCCAATGCAAATTACGAATACGTTTGTCGCTGCTGTCTCAAATCAGACGCTGATTTCGTTCAACTGGATACGTTGATGGTATCACGGAGCTTGGAGGCAAATGCAGAATCGGATAAAATTCCTTTATTGCGTTGCTTACTCTTTTGCATACGCACGGATAACAAACCCGATTTGCCACAATTAATCTGCACGGAGTGTAGCAAGACTTTGCAAATCTCTTACTATTTTCTGCAAAATGCTTTGCGTGCTCATGAGATTCTTTGCCGTAAACTATGTTCTGATAAGCCAACAAATTCGCGTCTTGGAGTGCAGCTTAATGGCAATTTTAGGCATGAGACGGCGTCAAAGGAAGTCCTTTCACCAGACAGCAAGGCGAGATCGCACAAGTCGGGAAATACTCGCCATGAATGTAAAATTTGTGGCGCGGTGGTACACAATCGTATGGAACTTAAGCAGCACATACGCCTGCACAGAGATACAATCATTCAGAATTGCTCACTATGCATTTTTAGTACGATCAAGCAGAGCCATCTGATGGAACACTATAGAGTGATGCACAATCTCACAACAGCTCAGGCCGAAGATCGCATTAATTTGGAGCAACTTGAACAAAAACTGCAGGAAGGTCCTAAAGTTTGTACTCTGGAGGATATTGAAATGCTTATACCGACTGTATTGACACCCGAGGATTATGCTAAGCCAAAAAGTGTCTATAACATTGTGCCACAATCGATGCCCAATAAGGACACAAGTGCGAATAATGTTAGCATTGGCACGGAATTCCTTGTCATGCCTGATGGATCACTACAACAAGTGAATGGAGGTGGAGTCCTCTTTGAATATATCGATGACAGTAAACGTAATGTGGCACCCACGGGCAATTTAAATGTACAAGCTCTTCTTGGAAATGACAACCTATCCCTTGATCCCATGGATATAGATATAAATGAGCTTATTGTGGAGGAGAATCTACCACAAATAAAAACTAAGCCAAGACCTGTAAAAATGGCAGCTGCTACTTTCAAGCACAAGTGCACAGTTTGCACGAAGTCGTTTCCCACTTTGGCACGCTTAAAAGCTCATCAATTAACTCACAGTAATTTACCCAAATTTCATTGCGATCAGTGTAATTTCTTTACGCTGCTTAGCTCTGATCTTGCCTATCATCATAGAGTAATGCATCAGGAGCCACCGACACCGTCCCCGGCTCCAGCACCGGCTGTAGAACAGGGTGAAATATTATCATGCGATCTGTGCCTATTCGAGACAAGGATATCAAGTGAGCTGTATGACCATTATACTGACAAGCACATGGTCCGTCCCACAGAGGTGCAATTGCGCCCTGCTTGTTGGTCTGCTGACGCGGAGACGGCAATCCATCAACTGCCGACGGATCAAGGTCAAAATATTGTTAATCCTTATCCAGTGCCTGTACAGCCGAATCCTCCAGAAACCGCAACAAATATTATTATCCATCAGACGGCACAGGCGAATACAACAGCAACCTTAACACCAATGGGCGATATTAGTGTGGTTGTTGATGCAACACCATTATTTTTTCCCAATGGCACGCAAACAGCTGTGACTACAATTGCCCCACTAGCACTAGAACCACCATCACCACCACCTGCACCACAACTGCAAGCTTCCACAGTTCCTCCAGCTATTGTGGAAAATAGCAATATCAATAGTACCAACACCACCACCAACACATTTGTTGAAGCATTTCCAGAAATCTCAGCCAACGAGAATCTTGTCCAGACAACTGAGCCAACTATTCCGCCAATCCCGAATCCAAATTTACCATCAACTTTTGGCGACATGCAAGACTTTATCGATAATACAGATGTGGCAGCCATATGCACCATACCAGCGGATGGTATGCCCGTTGTTGATGGCGATGATATAGTTATTGATAATAATAACATAAGCTTAGATTTTGATGCCGAAAATCTCTTTGGTGAATTCGAAGTGGAGGAAGAGGGTGGTGGAGAGGCAGTGTTTACCAGCCAATACAAATTCGAGAATCATATGTTTGTTCATAGGGGTCTGGCTCCCTATCGATGTGAGTTGTGCACAAATCTCTACAATATGAAACGTCTACTTATACGGCATTACAAGACCGTACACAAACGCATGCCCACCCGCGATATGGTCCAGGCAAAGGGAGATAAAATAACAGTAGCTCCTTCAAATAAGGAAACCATCCAGGTGGAGGTCAATAAAGATCCAATGCTTATGTGCGCCAAATGTCCATTTGAGTGTGAGTCGGATGCGGATATGAAAAAGCATTTAAATGCTCATCACGGCATAAATGATGGTGTTTCCTTACATGCGAATGAAGTGTTTATTATACGTAAATTACCATATGAGTGCCCACGTTGTATACGTTCGTTTGCTGCCAAACGGACACTAACACGTCATTTACAGCGTAGTCACCTGGTGGACACCATAATTGAGCTAACAAAAACCACCGATACACTCGTTCAAAGTGAGAAAGAGGCTGAAGGTGAAGCTGCTGCTGCAGCATCGGCGGCTTCATCTACAGCCCACTCGGAGCCATCTACTTTGGAAGTAAAGGCAACTGAAGTTACTTCTACTAACACGACTACAACTACAACTACAGCGGCTCCGGTTACAGCACCAGCTTCACCAACAGTAACCACAGCTTCTACATCTTCAACAATTTTTAATACACCAACACATTTCGATTTCGAATTTGATTTTGTGGGTGATAGTACATCTACGCCCAATGGTAACATCAACCCCCCAAATCCTGATTCCAACAATACCAATACCAATCCCAGCAGTACTACCACTACTACAAGCAATAACAATAATAACAACAACAACACTACTACAACAGATGGTTATACACCAGCAGCAGCCGAAGTGCTTCCCAGTCATGTACTCAATGGCAGTGACAAGTTATTAACTGCCGCCACTATGGAGCCATCACCCATTAAGGACGGACGAGCGCGTCTTCCACGTACTCCTATCTTTGTATGCAAATTGTGCAATAAGACATTCGATGAACTAAGTAAACTGGCTAAACATGAAACCGATATGCATTCTGGCGGAGAGCCGCGTCGTGTTGTCTTTCAGCACAAGTGTTCCACATGCCATGCAACCTTTCGCACCCTTACATTGCTAAAGTTTCACATGAAACGACATTTGGCACGCCGATTTCAATGCAACCGCTGTCCCAAGTGCTTCATCAAGAAGCCGGAATTGGAGCGGCATATCTTAATGAAGCACACAGAGAAACATGACATGAGCATGAACGATAAAGCCTTCAGATGCTCACTCGATGGATGTACAAAGACTTTTAATTTTAAACATCATCTGGTTCGTCATCAAAATGCTGGGCATCTGAAGGTTCGTCATATCTGCAATGTTTGTGGAAAAGAGATGATAAATAGTTTCAATTTGAGAGCTCATATGCGGATTCACAGTGGCAATGGACAGTCGTACAAGTGTCCAAATTGTGATAAAACCTACGTGCGACGCGGACCGCTTCGTCTACATGCTCGTCAAGCCCATCAACTTGAGCTAACTGAAAGCGATTGGGCCAGAATGTTATGCAATAATGTTCGCTCCAACAATTTGCACGTGAAAAAGCCTTCGCGTACTAAGAAAACAACAGAGGCACCAGAAGCCGCCGTCTAA
- Protein Sequence
- MPMPSQIERRSNEKAKAELQFKKSNANYEYVCRCCLKSDADFVQLDTLMVSRSLEANAESDKIPLLRCLLFCIRTDNKPDLPQLICTECSKTLQISYYFLQNALRAHEILCRKLCSDKPTNSRLGVQLNGNFRHETASKEVLSPDSKARSHKSGNTRHECKICGAVVHNRMELKQHIRLHRDTIIQNCSLCIFSTIKQSHLMEHYRVMHNLTTAQAEDRINLEQLEQKLQEGPKVCTLEDIEMLIPTVLTPEDYAKPKSVYNIVPQSMPNKDTSANNVSIGTEFLVMPDGSLQQVNGGGVLFEYIDDSKRNVAPTGNLNVQALLGNDNLSLDPMDIDINELIVEENLPQIKTKPRPVKMAAATFKHKCTVCTKSFPTLARLKAHQLTHSNLPKFHCDQCNFFTLLSSDLAYHHRVMHQEPPTPSPAPAPAVEQGEILSCDLCLFETRISSELYDHYTDKHMVRPTEVQLRPACWSADAETAIHQLPTDQGQNIVNPYPVPVQPNPPETATNIIIHQTAQANTTATLTPMGDISVVVDATPLFFPNGTQTAVTTIAPLALEPPSPPPAPQLQASTVPPAIVENSNINSTNTTTNTFVEAFPEISANENLVQTTEPTIPPIPNPNLPSTFGDMQDFIDNTDVAAICTIPADGMPVVDGDDIVIDNNNISLDFDAENLFGEFEVEEEGGGEAVFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPTRDMVQAKGDKITVAPSNKETIQVEVNKDPMLMCAKCPFECESDADMKKHLNAHHGINDGVSLHANEVFIIRKLPYECPRCIRSFAAKRTLTRHLQRSHLVDTIIELTKTTDTLVQSEKEAEGEAAAAASAASSTAHSEPSTLEVKATEVTSTNTTTTTTTAAPVTAPASPTVTTASTSSTIFNTPTHFDFEFDFVGDSTSTPNGNINPPNPDSNNTNTNPSSTTTTTSNNNNNNNNTTTTDGYTPAAAEVLPSHVLNGSDKLLTAATMEPSPIKDGRARLPRTPIFVCKLCNKTFDELSKLAKHETDMHSGGEPRRVVFQHKCSTCHATFRTLTLLKFHMKRHLARRFQCNRCPKCFIKKPELERHILMKHTEKHDMSMNDKAFRCSLDGCTKTFNFKHHLVRHQNAGHLKVRHICNVCGKEMINSFNLRAHMRIHSGNGQSYKCPNCDKTYVRRGPLRLHARQAHQLELTESDWARMLCNNVRSNNLHVKKPSRTKKTTEAPEAAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00571373;
- 90% Identity
- -
- 80% Identity
- -