Dpau014733.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila paucipuncta
Gene Symbol
hb
Assembly
GCA_035043875.1
Location
JAWNMP010000312.1:26298067-26300594[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 0.0002 0.013 15.9 0.2 1 23 280 302 280 302 0.99
2 6 0.011 0.71 10.4 3.6 2 23 310 331 309 331 0.97
3 6 0.0003 0.019 15.3 5.0 1 23 337 359 337 359 0.98
4 6 0.039 2.5 8.7 5.3 1 23 365 389 365 389 0.93
5 6 0.00024 0.016 15.6 0.4 1 23 765 787 765 787 0.96
6 6 0.0035 0.23 12.0 0.2 1 22 793 814 793 817 0.91

Sequence Information

Coding Sequence
ATGCAGAACTGGGAAACGAGCACCGCAGCGCCCAATTATGAGCAGCACAATGCGTGGTACAGCAGCATGTTCGCCGCCAACATCAAGCAGGAGCCCATCtcgcatcatcatcaccatcatcatgcTCATCGCAGTCATCATCAGCATCCTcatgacagcaacagcaatagtaaTGCAAGCAGTCCACACCAATCGCCGTTGCCCTCACCCAATCTGCCCAGCAACACCAATCTGCAACTGGAGCAATACctcaagcaacagcaacagcagcagcagcagcaacaacaacaacccatGGATACACTTTGTGCTGCTGCAATGACTCCATCGCCCAGTAACAATGACCAGAATAGCTTGCAACACTTTGATGCcacgctgcagcagcaactcttgcaacagcagcaatatcaGCAACACTTTcaagcagcacaacaacaacaacaacagcaacagcagcaacaccatcaTCTCACATTGGGCGGCTTCAATCCGTTGACGCCGCCCGGTTTGCCCAATCCCATGCAGCACTATTATGCCAGCAATTTGCGTCCCAGTccaacggcaacgacaacaacaacaacacctgctgctgctccaacgacaacagcagcaacaattgcactGCAAGCCAATGACAAATTACAGGCACTAACTCCACCCATGGATGTGACGCCACCAAAATCACCGGCCAAGTCCCAGCAATCCTGTGCGGAGCCAGAGAAGGAGCATGATTTAATGTCCAATTCGAGTGAGGATATGAAATATATGGCCGAGTCGGAGGATGATGACACCAACATACGGATGCCCATCTACAATTCGCATGGCAAGATGAAGAACTACAAGTGCAAAACGTGCGGCGTGGTGGCCATTACCAAAGTTGATTTCTGGGCGCATACGCGCACCCACATGAAACCGGACAAGATACTGCAGTGCGCCAAGTGTCCGTTTGTCACCGAGTTCAAGCATCATCTGGAGTACCACATACGCAAGCACAAGAACCAGAAACCGTTCCAGTGCGACAAGTGCAGCTATACGTGTGTGAACAAATCGATGCTCAACTCGCATCGCAAGTCGCACAGTTCGGTGTATCAGTATCGGTGTGCCGATTGTGATTATGCCACCAAATATTGTCACAGCTTCAAGTTGCATCTGCGCAAGTATGGCCACAAGCCGGGCATGGTCCTGGACGAGGATGGCACACCCAATCCCTCGCTGGTCATCGATGTCTATGGCACCCGACGTGGCCCCAAAAGCAAATCGCTCTCGGGCAATGGCAACTCCAGCAACTGTTCCAGTTCCAGCAGCAATAAGCGCAGCagtgcaacagctgcaacatctgtgcagcaccagcaaccaGTTATTCCACCAGCAGCCACATCTCAGCTATCGGCTGCTTTGCAAGGATTCCCAATGCCAGCGACggctgcagcaactgcagttgcaacaactgTGCCGCCTGTGTCGCCACCGTCGCCTGCGAAGAGTGTTGCCAGCAGCGTTGAGCAGGCGCCCAGTTTGTCGAACGCATTGCTGCCACCTTTGGCCAGTTTGTTGCAACAGAATCATCGCAACATGGCCTTCTTTCCCTACTGGAATCTCAATCTGCATATGCTTGCCGCTCAGCAGCAGGCTGCAGTTCTTGCCCAGCTCTCGCCGCGCATGCGTGACCAGCtCGACAACGAGGAGGATGAGCAGGAgccggaggaggaggaggaagctGAGGATGATTTTGAGCGCAAGTCAGTGGATTCAGCCATGGATCTGTCCCAAGGCACTCCGATCAAGGAggagccacagcaacaacagcgaacaCTGAACAATCACATGGCCATGAATTTAAAGATCAAGGACGAGGATACACCGctgatcagcagcagcagcgcctccCGACGCAAGGGCCGTGTGCTCAAGTTGGATACGTTGCTGCAGCTGAAGTCCGCTGCAATGTCCACGCCGGAGCAACAGCTCAAACTGCCATCGAGTGTGCTGCCCACAGCCTCATCTCCGATCTCTGGCAGCAGTGCCAATAAGCAGCTGGCGGATGATCCGTGCTCGGGTGCCAGCTCAGCGGATGAGTCCATGGAAACGATGGGTCATGTGCCACAGGTCAATACGAGTGCCAGTTCAACGGCATCCAGCTCCGGCAACAGCTCgaatgccagcagcagcagcaatccaactccagctgcaacagttgccgccTCAACCTcagcgtcggcgtcggcgtctgcatctgcatccgcGTCCGTGTCCAGCTCAtcctcgagcagcagcagcagctcaccGGCCATTTATGAGTGCAAGTATTGTGATATTTACTTCAAGGACGCCGTGCTCTACACCATCCACATGGGCTATCACAGCTGCGACGATGTCTTCAAGTGCAACATGTGCGGCGAGAAATGCGATGGACCCGTCGGACTCTTCGTGCACATGGCACGCAATGCGCACTCGTAA
Protein Sequence
MQNWETSTAAPNYEQHNAWYSSMFAANIKQEPISHHHHHHHAHRSHHQHPHDSNSNSNASSPHQSPLPSPNLPSNTNLQLEQYLKQQQQQQQQQQQQPMDTLCAAAMTPSPSNNDQNSLQHFDATLQQQLLQQQQYQQHFQAAQQQQQQQQQQHHHLTLGGFNPLTPPGLPNPMQHYYASNLRPSPTATTTTTTPAAAPTTTAATIALQANDKLQALTPPMDVTPPKSPAKSQQSCAEPEKEHDLMSNSSEDMKYMAESEDDDTNIRMPIYNSHGKMKNYKCKTCGVVAITKVDFWAHTRTHMKPDKILQCAKCPFVTEFKHHLEYHIRKHKNQKPFQCDKCSYTCVNKSMLNSHRKSHSSVYQYRCADCDYATKYCHSFKLHLRKYGHKPGMVLDEDGTPNPSLVIDVYGTRRGPKSKSLSGNGNSSNCSSSSSNKRSSATAATSVQHQQPVIPPAATSQLSAALQGFPMPATAAATAVATTVPPVSPPSPAKSVASSVEQAPSLSNALLPPLASLLQQNHRNMAFFPYWNLNLHMLAAQQQAAVLAQLSPRMRDQLDNEEDEQEPEEEEEAEDDFERKSVDSAMDLSQGTPIKEEPQQQQRTLNNHMAMNLKIKDEDTPLISSSSASRRKGRVLKLDTLLQLKSAAMSTPEQQLKLPSSVLPTASSPISGSSANKQLADDPCSGASSADESMETMGHVPQVNTSASSTASSSGNSSNASSSSNPTPAATVAASTSASASASASASASVSSSSSSSSSSSPAIYECKYCDIYFKDAVLYTIHMGYHSCDDVFKCNMCGEKCDGPVGLFVHMARNAHS