Dosh006420.1
Basic Information
- Insect
- Drosophila oshimai
- Gene Symbol
- -
- Assembly
- GCA_018150695.1
- Location
- JAECWM010000002.1:63428-69997[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5e-12 1.3e-08 34.4 0.0 1 40 439 479 439 482 0.90 2 4 2.8e-14 6.9e-11 41.6 0.1 2 39 494 531 493 534 0.94 3 4 6.4e-18 1.6e-14 53.3 0.0 1 45 548 593 548 593 0.98 4 4 6.6e-20 1.6e-16 59.7 0.0 1 43 600 643 600 644 0.97
Sequence Information
- Coding Sequence
- ATGCATCCTTTCCTGACGGTGCACCCCATCCTCTCCAGCCTCCAGCCTCCATCCTCCATCCTCTTGGCCTGTAGTTCCGAGACCTCGGGGGCCACCGGAGCCATGCCCATTCCACGACAGACCTTCACCTCCACCACCACCACCTTCTTCTTTTCGCAGGCGGGCCTCTTGCGCACCGCCGAACAACTAAAGATCAAAGGCCTCTGCGAAACCGCCGAGAACGCGGATGATCTGAACGACGCGGCCACAGCAACGATCACTGTTTCAGAGAACATTCAGCAGGCGGTCTTGCTGAGCTCCTCCTCGGCCAGCGGTAGCAGCGGAAGCTCAGCTGGCGGACAGCAGGCACCACAGACGCCATCCGGTCTGCAGCCAACCCCTCGCAAGTCGCGACTAAAGCGCTCGAAATCCCCGGACTTGCCAACAGGAAGCTCTGGTGGCTCCACGAGCAGCTCATCCCAGCAGCAGCAGCAGCAACCGCAGCCGGCACACCACCACTCGCAGACCATACTCATCCAGGGCCAGAATCCAAACTCCATAGTTAGCCTGCAGCAGACGGCCGACGGCAACTATATACCGGTATCGGGAACTGGCGACGATTCCGACGCAGACGACCACGATCACGAGCACGGACATCCGCACCACGGACACGGACATAGCCACGATCATAGCCACAGTCACAGTCACAGCCACGATCACGAGCACGAGACCAAGCCGAACAAGATCTGCAAAACAGAGCAGTCGGTCGCCTCGCCGGCATCCAATTCATCCAGCGCCTCAAACAATGCAGCGGGCGTGAGCGGAGTGACATCCACCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACCCCAGTCACCGTCACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGATATAGACAATCATCTGGCCCAGCAGATCCATCGGCTCGATCACCAGATAAAACACGAACCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCTGGTCATATGGACATGTACAATTCGGACACGAGCGAGGATTCGATGATGATCGCCAACGGCTCGCCGCACGATCAGAAGGAGCCGCACTACACGAATTTGGACCAGCAGCATGGGCTGGGTGGCAGCAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTCCAAAATGCCTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTCGGCATCCCCTCCTCGACGCTCTACAAGATTGCCCGGCGCGAGGGCATCCGCCTAGCGGCGCCCTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAGGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACGCCCTGGTCGGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCCTACAGCTCGCTCTATGGCCGCTTCAAGCGGGGCAAATACGATGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGTTGCATATGTTACAGCAACAGTTCCCTTGA
- Protein Sequence
- MHPFLTVHPILSSLQPPSSILLACSSETSGATGAMPIPRQTFTSTTTTFFFSQAGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVLLSSSSASGSSGSSAGGQQAPQTPSGLQPTPRKSRLKRSKSPDLPTGSSGGSTSSSSQQQQQQPQPAHHHSQTILIQGQNPNSIVSLQQTADGNYIPVSGTGDDSDADDHDHEHGHPHHGHGHSHDHSHSHSHSHDHEHETKPNKICKTEQSVASPASNSSSASNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDHQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00488583; iTF_00486488; iTF_00515515;
- 90% Identity
- iTF_00486488;
- 80% Identity
- -