Dbia004216.1
Basic Information
- Insect
- Drosophila biarmipes
- Gene Symbol
- -
- Assembly
- GCA_018148935.1
- Location
- JAECYG010000260.1:6400651-6421589[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.5e-12 1e-08 34.5 0.0 1 40 401 441 401 444 0.90 2 4 3e-14 5.7e-11 41.7 0.1 2 39 456 493 455 496 0.94 3 4 7e-18 1.3e-14 53.3 0.0 1 45 510 555 510 555 0.98 4 4 7.2e-20 1.3e-16 59.7 0.0 1 43 562 605 562 606 0.97
Sequence Information
- Coding Sequence
- ATGACTTGGCCCGTCTTGGGCTTCAGCTTCGAGCTTTGGCTTTGGCTCTTTGAGGTCAACAAACAGCTGGGAAAACGGCGCGTCAAAGTCTCCTCGGCCAGCGGCAGCAGCGGAAGTTCAGCCGGCGGACAGCAGGCTCCACAGACGCCCTCATCCGGTTTGCAGCCCACGCCGCGCAAGTCCCGACTAAAGCGCTCCAAATCCCCGGATCTGCCATCGGGCGGAGCAGGCAGCTCTGGTGGCTCAAGTAGCAGCGCATCGCAGCAGCAACCGCAGCCGGCGCACCACCAGCACCACCACCCGCAGACCATCCTGATCCAGGGCCAGAATCCCAACTCCATTGTGAGCCTACAGCAGACGGCCGACGGCAATTATATACCAGTGTCGGCCACCGGCGACGATTCCGACGTCGAAGATCACGATCACGAGCACACAGGACATCACCACGGAGGACACGGTCACGGCCACGATCACGAGCACGAGCACGATCACGAGCACAGCCACGATCACGAGCACGAGAGTAAGCCGAATAAGATCTGCAAGACCGAGCAGTCGGTGGCATCGCCGGCGTCCAATTCATCCAGCGGCTCGAACAATGCAGCGGGCGTGAGCGGCGTGACCTCCACCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACCCCAGTCACCGTAACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGATATAGACAATCATCTGGCTCAGCAGATACATCGGCTTGATCAGTCCCCCATGCACTCGATATCACATCACCACACCGGCGATGAGAGCAACTCGAATATGGTGCAGCACATCAAAAGCGAGATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCCTCGGGGCACATGGACATGTACAACTCGGACACGAGCGAGGATTCAATGATGATCGCCAATGGCTCGCCGCACGATCAGAAGGAGCCGCACTATACGAATTTGGATCAGCAGCACGGCATGGGTGGCAGCAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAATGCCTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAGGCATCAAAGGCCTTCGGCATCCCCTCCTCGACGCTCTACAAGATTGCCCGGCGCGAGGGCATCCGCCTTGCGGCGCCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATTCGGGCGGGTAACACATCGGTGCAGAAGGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAACGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACGCCCTGGTCCGAGGATGCCATGAACGAGGCACTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATCCACTATAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGCGGCAAATACGACGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGTTGCATATGTTACAGCAGCACACCACAGCACTCCGCAGCATCACACACCACGGGACGCCGGAGCGTAGTTGA
- Protein Sequence
- MTWPVLGFSFELWLWLFEVNKQLGKRRVKVSSASGSSGSSAGGQQAPQTPSSGLQPTPRKSRLKRSKSPDLPSGGAGSSGGSSSSASQQQPQPAHHQHHHPQTILIQGQNPNSIVSLQQTADGNYIPVSATGDDSDVEDHDHEHTGHHHGGHGHGHDHEHEHDHEHSHDHEHESKPNKICKTEQSVASPASNSSSGSNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNMVQHIKSEIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGMGGSKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQHTTALRSITHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00565294;
- 90% Identity
- iTF_00565294;
- 80% Identity
- -