Dbir008709.1
Basic Information
- Insect
- Drosophila birchii
- Gene Symbol
- -
- Assembly
- GCA_008042755.1
- Location
- VNKA01005408.1:47809-54105[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.5e-12 1.5e-08 34.2 0.0 1 40 428 468 428 471 0.90 2 4 3.6e-14 8.6e-11 41.5 0.1 2 39 483 520 482 523 0.94 3 4 8.4e-18 2e-14 53.1 0.0 1 45 537 582 537 582 0.98 4 4 8.5e-20 2e-16 59.5 0.0 1 43 589 632 589 633 0.97
Sequence Information
- Coding Sequence
- ATGCCTGAAATGGAGAGATGGAAATGGTTGGAGGAGGCACAAACGAAGATGGGCCTCTTGCGCACCGCCGAACAGCTAAAGATCAAGGGCCTCTGCGAAACCGCCGAGAATGCGGATGATTTAAACGACGCGGCCACAGCAACGATCACAGTTTCGGAAAATATTCAGCAGGCGGTTGTGGGCAACATTGTGAATGCAACCATACAGACTTCACTGACGCCATCCGGCGGCCTGCAGGCGACGCCACGCAAGTCTCGGCTAAAGCGATCCAAATCACCGGATTTGCCGACAGGTTCTGGGAGCTCTGGTGCCTCAAGCAACTCACAGTCACAGCAGCAACCGCAGCCAGCACACCACCATCCCCACCAGACCATACTCATCCAGGGCCAGAATCCCACCTCGATTGTTAGCCTACAGCAGACGGCCGACGGCAACTATATACCCGTGGGAGCAGGAACTGGTGACGAATCAGACACCGAGAACGATCACGAGCAGGAACACGAGCATATCCACgggcacggacacggacatTCGCACGGACACggccacagtcacagtcacgaCCACGATCACGACCACGAGCTCGAGAATAAACCGAATAAGATCTGCAAGACGGAGCATTCGGTGGCATCGCCGGCTTCCAATTCATCGAGCGCCAACTCAAACAATGCAGCGGGCGTGAGCGGCGGCGTGTCCACCACCGGCAACCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTTACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTTACGGAGCACGTCGATCTGTCCTGCAACCCTAGCACGGACACTCGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCCCAGCAAATACATCGGCTCGATCACCAAATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCAGGACATATGGACATGTACAATTCGGACACGAGCGAGGATTCAATGATGATCGCCAACGGCTCGCCACATGATCAGAAGGAGCCGCACTATACGAATTTGGACCAGCAGCACGGTCTGGGCGGCGGCAGCGTTTGTGGCCCGGGGCcaggtggtgctggtggtggtgggggcaTGAGTGGTGGggctggctctggctctggcgaGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGAACCAAATCATGGAACGAGGATGCTCTGCAGAATGCCTTGGAGGCGTTACGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTTGGCATACCCTCGTCGACGCTCTACAAGATTGCCCGACGGGAGGGCATCCGCCTTGCGGCACCGTTTAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAAGCAAGTGCCGAATTTGGCATACCAACAGgaacactTTATGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCAAATCCAACGCCCTGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCTGTGCGTGTCGGCCAAATGTCCATCAACCAGGCGGCCATCCACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGAGGCAAATACGATGTGGTGGCCAATACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAATACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGTTGCACATGTTGCAGCAACAGTTCCCGTATAGTCCGTCGCCTCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAGCATCATAGCTCGGCGCAGGGGCCGCCAACGCCGCAGCacatgcaacagcaacagcacgTGGTGCATATGCAACAGCAGTCACCCCATCCGGGTCACCATCCGCAGCACATGCAGCAGGATGTGGTCACATCGAGCAGCCAGGTGGTGCatagccaacagcagcagcagcagcttcagcagATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
- Protein Sequence
- MPEMERWKWLEEAQTKMGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIQTSLTPSGGLQATPRKSRLKRSKSPDLPTGSGSSGASSNSQSQQQPQPAHHHPHQTILIQGQNPTSIVSLQQTADGNYIPVGAGTGDESDTENDHEQEHEHIHGHGHGHSHGHGHSHSHDHDHDHELENKPNKICKTEHSVASPASNSSSANSNNAAGVSGGVSTTGNQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDHQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGGSVCGPGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSAQGPPTPQHMQQQQHVVHMQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00565294;
- 90% Identity
- iTF_00540992;
- 80% Identity
- -