Dnik015601.1
Basic Information
- Insect
- Drosophila nikananu
- Gene Symbol
- retn
- Assembly
- GCA_008042635.1
- Location
- VNJV01003487.1:1-3948[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1e-19 2.4e-15 57.1 0.0 18 89 1 70 1 70 0.94 2 2 1.4 4.3e+03 -1.4 0.8 11 14 233 236 203 283 0.55
Sequence Information
- Coding Sequence
- ACCCCCATCAATCGGCTGCCGATCATGGCCAAGTCGGTGCTGGATCTGTACGAACTGTACAATCTGGTGATAGCCCGCGGCGGCCTGGTGGATGTTATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCGTCGAGCATCACCAGTGCCGCCTTCACCCTGCGCACCCAATACATGAAGTATCTCTACCCGTACGAGTGCGAGAAGAAGAACCTCAGCACGCCGGCGGAGCTGCAGGCGGCCATCGATGGCAATCGGCGGGAGGGACGTCGCTCCAGCTACGGCCAGTACGAGGCCATGCACAATCAGATGCCGCTGACACCCATTTCGCGACCCTCGCTGCCGGGTGGCATGCAACAAATGTCCCCTCTGGCACTGGTCACCCATGCCGCAGTGGCTAACAATCAGCAGGCTCAGGCcgcggccgccgccgccgctgcccatCACCGCCTGATGGGAGCCCCGGCCTTTGGCCAAATGCCCAACCTGGTCAAGCAGGAGATCGAAAGCCGCATGATGGAATATTTGCAGTTGATTCAGGCCAAGAAGGATCAGGCCATGCCGCCGGGCCTGGGTGCCAGCCTGccccaccagcagcatcagcagcagcaggcgcaacagcagcagcaacaccagcagcagcagtcacagttgcagcagcagcaacagcatcagcagcagcagcagcatcacctgcagcagcaacagcagcgtcAGCGCTCCCAGAGTCCCGAACTGAGCAAGCACGAGGCGCTCAGCGCCCAGGTGGCTCTGTGGCACATGtatcacaacaacaacagtccGCCGGGCTCAGCACACACCTCCCCCCAGCAACGCGAAGCCCTGAACCTCTCCGACTCGCCGCCGAACATCACGAACATCAAAAGGGAACGCGAGCGGGAGCCGACGCCCGAGCCCGTGGAGCAGGACGACCTCTCCGCCGGCCCCCAGCCGCCGCCTGCCAAGCGCATGGGCAGCGGCCTCCTGCCACCCGGCTTCCCCGCCAATTTCTACCTGAATCCCCACAACATGGCCGccgtggcagcggcggcgggcttccaccatcagcagcagcagcagcagcaggacgccGCCTCCGAGGGCGAGCCGGAGGACGAGTACGGTCATGGGGGACACAACACCACAGGCAACTCGTCCTCGCTGCACGATGACAGCGAGACAGCGCAACCAATGAATGGACATGgacaccaccatcaccaccatcatcatcatcaccagaGCCATCAGCTGGACAAATCGGATGATTCGGCCATTGAGAACTCGCCCAGCAcatccaccaccaccgcctcgGTGGGTCATCGCCACAGCTCGCCGGTGTCCACCAAGAAGAAGGGCGGTGGCTGTGGGTCAAAGCCGCAGGACAAGGATCTAGCTGGTGGGGATAAGGGCGTGGTGGGCAGTGGCAAGCTGAATCCCCTGGAAACCCTGAGCCTGCTCTCCGGCATGCAGTTCCAGGTGGCCAGAAATGGCACCGGCCAGAATGGCGAACAGCAGCTAATGGTCAATCTGGAGCTGAACGGCGTCAAGTACTCGGGTGTTCTGGTGGCCAATCTGCCCCACTCCGGCCAGAGCGTGACCAGGACCAGCTCATCACCGCCCTGCCACGAGGCTGAAGTACCCCTAAGCCGAggggaagaggaggaggaggagcaggagcacgatgatgaggaagaggaggagcacaGGAAAGCCGCtgacgaggaggacgaggaggccCATCGATCGCCCATTAAGCTGAAGACAGAGAACGAGCAGGATGAGGACCAGGACATGGCGACGGCCATGGTGAATGGAGGCGGAGGTTCGGCagtgggtggtggtgctggcggCGGCGTGGCAATGCCCCTGCTCAAGGACGCGGTGGTCAGCTAG
- Protein Sequence
- TPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKDQAMPPGLGASLPHQQHQQQQAQQQQQHQQQQSQLQQQQQHQQQQQHHLQQQQQRQRSQSPELSKHEALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNITNIKREREREPTPEPVEQDDLSAGPQPPPAKRMGSGLLPPGFPANFYLNPHNMAAVAAAAGFHHQQQQQQQDAASEGEPEDEYGHGGHNTTGNSSSLHDDSETAQPMNGHGHHHHHHHHHHQSHQLDKSDDSAIENSPSTSTTTASVGHRHSSPVSTKKKGGGCGSKPQDKDLAGGDKGVVGSGKLNPLETLSLLSGMQFQVARNGTGQNGEQQLMVNLELNGVKYSGVLVANLPHSGQSVTRTSSSPPCHEAEVPLSRGEEEEEEQEHDDEEEEEHRKAADEEDEEAHRSPIKLKTENEQDEDQDMATAMVNGGGGSAVGGGAGGGVAMPLLKDAVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00571689; iTF_00484918; iTF_00613293; iTF_00491296;
- 90% Identity
- iTF_00484918;
- 80% Identity
- -