Dpec012016.1
Basic Information
- Insect
- Drosophila pectinifera
- Gene Symbol
- retn
- Assembly
- GCA_008042775.1
- Location
- VNKC01002158.1:7804-15119[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-26 4.7e-23 81.2 0.0 2 89 20 105 19 105 0.96 2 2 1.4 3.6e+03 -1.8 0.6 11 12 265 266 236 311 0.58
Sequence Information
- Coding Sequence
- ATGCTCATCTCGGAGGATCAAATACAGGAGCTCTATGAAATCAACGATGACCCCAAACGCAAAGAATTCCTGGACGACTTGTTCTCATTTATGCAAAAGCGCGGTACGCCGATCAATCGGCTGCCGATCATGGCCAAATCGGTGCTGGACCTCTACGAGCTGTACAACCTGGTGATAGCCCGCGGCGGTTTGGTGGACGTTATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTGCATCTGCCGTCGAGCATCACCAGTGCCGCCTTCACCCTGCGCACCCAATACATGAAGTATCTCTACCCGTACGAGTGCGAGAAGAAGAACCTGAGCACGCCGGCGGAGCTGCAGGCGGCCATCGATGGCAACCGCCGGGAAGGACGCCGCTCCAGCTACGGCCAGTACGAGGCCATGCACAACCAGATGCCGCTGACGCCCATTTCGCGGCCCTCGCTCCCGGGTGGCATGCAGCAAATGTCGCCTCTGGCCCTGGTCACCCATGCAGCAGTGGCCAATAACCAGCAGGCTcaggccgctgccgctgccgccgctgcccatcACCGCCTGATGGGAGCCCCGGCCTTTGGGCAGATGCCCAACCTGGTCAAGCAGGAGATCGAGAGCCGTATGATGGAGTACTTGCAGCTGATTCAGGCCAAGAAGGAGCAGGCCATGCCGCCGGGCCTGGCCGCCAGCCTtccccaccagcagcatcagcagcaccagcagcaggcgcagcaacagcagcaccagcagcagcagcagtcgcagcagcagcaacaacagcagcaacatcacctgcagcagcagcgccagcgctCACAGAGTCCAGATCTGAGCAAGCACGAGGCGCTCAGCGCCCAGGTGGCTCTGTGGCACATgtaccacaacaacaacagtccGCCGGGATCCGCACACACCTCCCCGCAGCAACGCGAAGCCCTGAACCTCTCCGACTCGCCCCCGAATCTCACGAACATAAAAAGGGAACGCGAGCGGGATCCCACGCCCGAGCCCGTGGAGCAGGACGAGCAGGCGAACCACCAGCCCCCGCCGGCTAAGCGCATGGGCAGCGGCCTGCTCCCGCCCGGCTTCCCCGCCAACTTCTACCTGAATCCACACAACATGGccgcagtggcggcggcggcgggcttCCACCACCAGCAGGCGAGCCACCAGCAGGACGCCGCCTCCGAGGGCGAGCCGGAGGACGAGTACGGCCATGCGGAGCACAACACAACGGGCACCTCGTCCTCGCTGCACGACGACAGCgagccgcagcagctgaaCGGCCATGGGCACGGCcatggacacggacacggacaccaccaccatcaccagaGCCATCAGCTGGACAAGTCGGATGACTCGGCCATCGAGAACTCGCCCAgcacctccaccaccaccgcttCGGTGGGCCATCGCCACAGCTCGCCTGTGTCCACCAAGAAGAAGGGCGGATGCGGATCCAAGACCcagggcggcggcagtggcaagGATATGTCCGGTGAGGACAAGGGCTCGGCCAGTGGCAAGCTGAATCCCCTGGAGACGCTGAGCCTGCTCTCGGGCATGCAGTTCCAAGTGGCCAGAAATGGAACTGGCGAGAATGGCGAACAGCAGCTAATTGTCAACCTGGAGCTGAACGGCGTCAAGTACTCGGGTGTGCTGGTAGCCAATGTTCCCCACTCCTCCCAGAGCGTGACGAGGAACAGCTCGCCCTGCCACGAGGCCGAGGGCCCGCTgaacgaggaggacgagcacgacgacgaggaggtggaggagcagaAAGCCGCTGACGAAGAGGACGCCCATCGATCACCCAACAAGCAGGCAGAGTGCGTGGATGCCGACGACCAGGACATGGAGTCCAGTGCGGCAGCCCATGTGAATGGCGGAGTAGGAGGCAGTGGCTCGGCGGTGGGTGGTGCTGGCGTTGGAATGCCCCTGCTCAAGGACGCGGTGGTCAGCTAG
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQAMPPGLAASLPHQQHQQHQQQAQQQQHQQQQQSQQQQQQQQHHLQQQRQRSQSPDLSKHEALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKRERERDPTPEPVEQDEQANHQPPPAKRMGSGLLPPGFPANFYLNPHNMAAVAAAAGFHHQQASHQQDAASEGEPEDEYGHAEHNTTGTSSSLHDDSEPQQLNGHGHGHGHGHGHHHHHQSHQLDKSDDSAIENSPSTSTTTASVGHRHSSPVSTKKKGGCGSKTQGGGSGKDMSGEDKGSASGKLNPLETLSLLSGMQFQVARNGTGENGEQQLIVNLELNGVKYSGVLVANVPHSSQSVTRNSSPCHEAEGPLNEEDEHDDEEVEEQKAADEEDAHRSPNKQAECVDADDQDMESSAAAHVNGGVGGSGSAVGGAGVGMPLLKDAVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00561533;
- 90% Identity
- -
- 80% Identity
- -