Dnig025053.1
Basic Information
- Insect
- Drosophila nigromelanica
- Gene Symbol
- retn
- Assembly
- GCA_004149445.1
- Location
- SCDR01000081.1:35689-62814[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-26 1.4e-22 80.5 0.0 2 89 315 400 314 400 0.96 2 2 2.2 8.4e+03 -2.2 0.2 20 40 557 584 531 598 0.53
Sequence Information
- Coding Sequence
- ATGGATTGTAGCGGCCGTTCAAATAACAATATTGAACGCGATTCCGATTTGGGTGACGATTTgTCCCACGGCGATCGTACGGATGACGAGATGCGCGACTGCGACTCCGCCGACGGTGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCAGCGCGCCTCAGTCACACAGTCGCCGGCGGCGCTGGCCTCAACTTCGCCAGTCCGGAGCAGCAAACAGATCTGCCACTCAGcCATCATCACCAATTGCCGCCGAATCATCCGCTTAATGCGCTGGGCAGTTTCATGGGCATCGGCGGCCTACACAGCATTCCAAATTTGCAGCACAGCGATGTTCTCGAGAAGCTCAAGATGCAAGTTCGAGACATGAAAGTTGGTCTCATGGAACAGGACTATGCAGCGGCGGCACACGCAGCCGCCTTCGGCGCCAACATGCTGCCCACAACCATCAGCAGCGCCTTTCCACTCGCCCACAATCCGGTGGCAGCGGCCGCGGCAGCCGCATCCTTTGGCCACGCGGCGGCCAATGTGACCGTGCCGCCAGCCGGCAATGGTGCCAGCTACAATGGCGCCGCCGGTGGAGGCCCAAATGTTCAGGCGGGAgtaactgcagctgcagctgcagcaattgGCAGCGGTGCCAGCAACAATGGAACGAACGGTGGCGGCAcaggtggcggtggtggcggcacaggtggcggtggtgccggcagtggtggtggtggcagcaacaacaatgccgcGGGCAGCGGGCATCCCTTCTCGTTTGCATCGCCGACAGCGCCGAGCGCCAAAGAAGCGCGCCAATTTGCAGTTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCCTCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTATGAAATCAACGATGATCCCAAGCGCAAGGAGTTTCTCGACgatttgttttcgtttatGCAAAAGCGCGGCACGCCCATCAATCGCCTGCCCATTATGGCCAAATCTGTACTGGATCTGTATGAGCTATATAATCTGGTGATAGCACGCGGCGGCCTTGTCGAtgttatcaacaaaaaattatggcAGGAGATAATCAAGGGACTCCACCTGCCGTCCAGCATCACCAGTGCCGCATTCACGTTGCGTACCCAATACATGAAGTATCTGTATCCGTACGAGTGCGAGAAGAAGAACCTCAGCACACCGGCCGAGCTTCAAGCGGCCATTGATGGCAACCGGCGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCACTGACGCCCATTTCGCGGCCACAGCTGCCTGGTGGCATGCAACAGATGTCGCCGTTGGCACTGGTCACACACGCCGCGGCGGCCACCAATCAGCAGGCGCAGGCAGCGGCcgcggctgcggcagcgcaCCGCCGACTGATGGGCGGACCGGCGTTTGGCCAGATGCCGAATCTGGTGACGCAGGAGATCGAGAACCGGATGATGGAGTATCTGCAGCTGATACAGGCCAAGAAGGAGCAGAGTGCGCCAGTGCCACAcacccaccagcagcagcagcagcagcaacagcagcagcagcagcaacagtcgctgcaccatcaccagcaacaacaacagcagcagcagcagcagcggcagcgttcGCAAAGTCCCGAGCTGAGCACGCGCGATGCGCTCAGTGCACAGGTGGCGCTGTGGCACATGTATCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAGCGCGAAGCTTTGAACCTCTCAGATTCGCCGCCAACTCTCAATTTGAATCACATAAAACGGGAACGCGAACGCGATCCAACGCCGGAGCCGGCGGATAACGAGGAGACAGCGCACCAGCCGCCGCCGGCGAAACGTGTGGGCAGCGGCCTGATGCCGCCCGGTTTTCCCGCCAACTTCTATTTGAATCCACACAACATGGCCGCCGTTGCAGCCGCCGCGGGCTTCCATCaccaggccaacaacaacaacaacagcaacaaccacctGAACCACCATCttcaccatcagcagcagcagcagcaacagcaacaggatgCAGGTTCCGATGGCGAGCCAGAGGATGACTTCGCCCATGCGGAGCACAATACAACCGGAAATTCGTCGTCCATGCAGGAGGACATTGAGCCGCCGCAGCTGAATGGacaccaccatcatcatcaccatcatgaCGACCATCATgaccatcatcatcaccatcagaATCATCTGGACAAGTCGGATGACTCGGCCATCGAGAACTCGCCCAGCACGTCCACAACGGCGTCGGCATCGGGCGGACATCGCCACAGCTCGCCGGTGTCCACCAAGAAGAAGGCCAACAAGGAGGACAACTGCACGGGCAGCGTGGCCAGCAGTGGAGGAGGAGGTGTGGGCGGCATCAAGCTGAATCCCCTCGAGACACTCAGCCTGCTGTCGGGCATGCAGTTCCAAGTGGCACGCAACGGCACCGGCGCCAACGGCGAGCAGCAGTTGATTGTCAATCTGGCCCTGAATGGCATTCAGTACTCGGGTGTCCTGGTGGCCAATGCCAATACCCGGCCAGCGTGCACCGGAACcgccgccacgcccaccaccACGGCCACCAACACCACCGTGGAACCAACGGAGGCGGAGGCCGAGGAGGTGGACGAGGAGCTGGAGGAGGCCAAGCACGAAAGCCGCGAGCAAAAGCCCAACGAGGAGgaaacacagcaacagcagcccgCGGATGACATTGTCAATGGCGGCAGTCTGGGAACGGGAattgcggctgcggctgcggctgcggctgcggggGGCAATGGAAGTGGCagtggaagtggaagtggaaaTGTGGGCGTATCCCTGCTGAAAGATGCTGTGGTCAGTTCATAA
- Protein Sequence
- MDCSGRSNNNIERDSDLGDDLSHGDRTDDEMRDCDSADGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSAFPLAHNPVAAAAAAASFGHAAANVTVPPAGNGASYNGAAGGGPNVQAGVTAAAAAAIGSGASNNGTNGGGTGGGGGGTGGGGAGSGGGGSNNNAAGSGHPFSFASPTAPSAKEARQFAVNSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPQLPGGMQQMSPLALVTHAAAATNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQSAPVPHTHQQQQQQQQQQQQQQSLHHHQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPADNEETAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQANNNNNSNNHLNHHLHHQQQQQQQQQDAGSDGEPEDDFAHAEHNTTGNSSSMQEDIEPPQLNGHHHHHHHHDDHHDHHHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKANKEDNCTGSVASSGGGGVGGIKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLALNGIQYSGVLVANANTRPACTGTAATPTTTATNTTVEPTEAEAEEVDEELEEAKHESREQKPNEEETQQQQPADDIVNGGSLGTGIAAAAAAAAAGGNGSGSGSGSGNVGVSLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00547140; iTF_00541558; iTF_00567319;
- 90% Identity
- iTF_00547140;
- 80% Identity
- -