Dmic001007.1
Basic Information
- Insect
- Drosophila micromelanica
- Gene Symbol
- retn
- Assembly
- GCA_004143905.1
- Location
- SCDX01001200.1:102794-118716[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-26 7.8e-23 80.5 0.0 2 89 324 409 323 409 0.96 2 2 0.68 1.5e+03 -0.6 0.1 6 45 550 594 544 607 0.65
Sequence Information
- Coding Sequence
- ATGTGCCATGATGTTATAGCCACAAAGAAGATGGAGGTGCTCACGGAGAAGAGGCAACGAACGGCAAAGGCGAAGGCGGAGGCTGTTGCCACTAAGCTAAGCCAAGAGCCAGACTCCCACGGCGATCGTACGGATGACGAGATGCGCGACTGCGACTCCGTCGACGGTGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCAGCACGCCTCAGTCACACAGTCGCCGGCGGCGCTGGCCTCAACTTTGCCAGTCCGGAGCAGCAAACAGATCTGCCACTCAGccatcatcatcaactgCCGCCGAATCATCCGCTTAATGCCCTGGGCAGTTTCATGGGCATCGGCGGCCTACACAGCATTCCAAATCTGCAGCACAGCGATGTTCTCGAGAAGCTCAAGATGCAAGTGCGAGACATGAAAGTCGGTCTCATGGAACAGGACTATGCAGCGGCGGCACACGCAGCCGCCTTTGGCGCCAACATGCTGCCCACAACGATCAGCAGCGCCTTTCCCCTGACCCACAATCCGGTGGCAGCGGCCGCGGCCGCGGCATCCTTTGGCCATGCGGCGGCCAGTGTGACCGTACCGTCAGCTAGCAATGGTAACAGTTACAATGGTGCCGCCAGTGGAGCCGCAAATGTTCAGGCAGGAGTAACTGCAGCATCAGCGGCAGCCAGCAACAATGGAACGAACAATGGTGGCGGTGCaggtggtgctggtggcaCAGGtggtgccaacaacaacaacaacaacaacaacaatgccgcTGCCAGCGGGCATCCCTTCTCGTTTGCATCGCCGACAGCGCCGAGCGCCAAAGAAGCGCGCCAATTTGCAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTATGAAATCAACGATGATCCCAAGCGCAAGGAGTTTCTCGACgatttgttttcgtttatGCAAAAGCGCGGCACGCCCATCAATCGCCTGCCCATTATGGCCAAATCGGTGCTGGATCTGTATGAGCTATATAATCTGGTGATAGCGCGCGGCGGCCTCGTCGATGTTATCAACAAGAAGCTGTGGCAGGAGATAATCAAGGGACTCCACCTGCCGTCGAGCATCACCAGTGCCGCATTCACGTTGCGTACGCAATACATGAAGTATCTGTATCCGTACGAGTGCGAGAAGAAGAACCTCAGCACACCGGCCGAACTCCAAGCGGCCATTGATGGCAATCGGCGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCACTGACGCCCATTTCGCGGCCACAGCTGCCTGGTGGCATGCAACAGATGTCGCCGTTGGCGCTGGTCACACACGCTGCGGCGGCCACCAATCAGCAGGCGCAGGCAGCGGCCGCGGCTGCGGCAGCGCACCGCCGACTGATGGGCGGGCCGGCGTTTGGCCAGATGCCGAATCTGGTGACGCAGGAGATCGAGAACCGGATGATGGAGTATCTGCAGCTGATACAGGCCAAGAAGGAGCAGAATGCGCCCGGGCCTCAcacccaccagcagcagcagcagcagcagcagcaacagcagcagcaacaacagtcgcTGCAccatcaccagcagcagcagcagcggcagcgttcGCAGAGTCCCGAGCTGAGCACGCGCGATGCGCTCAGTGCACAGGTGGCGCTGTGGCACATGTATCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCTTTGAACCTCTCCGATTCGCCGCCAACTCTCAATTTGAATCACATAAAACGGGAACGCGAACGCGATCCAACGCCGGAGCCGGCGGATATCGAGGAGACCGCACACCAGCCGCCGCCGGCGAAACGTGTGGGCAGCGGCCTGATGCCGCCCGGTTTTCCCGCCAACTTCTATTTGAATCCACACAACATGGCCGCCGTTGCAGCCGCCGCGGGCTTCCATCACcaggccaacagcaacaacaacaacaacaacagcagcagccacctgaaccaccatcatcaccatcagcagcagcagcagcaacagcagcaccaggaTGCAGCATCCGATGGCGAGCCAGAGGATGACTTCGCCAATGCGGATCACAATACAACTGGGAATTCGTCGTCCATGCAGGAGGACATTGAGCCGCCGCAGCTGAATGGACACcaccatcatcaccatcatgaCGACCACCATGACCACCATGACCATCATCACCACCATCAGAATCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCGCCCAGCACATCCACAACGGCATCGGCGTCGGGCGGACATCGCCACAGTTCGCCGGTGTCCACCAAGAAGAAGGCCAACAACAAGGAGGACAACTGCACGGGCAGCGTGTCCAGCAGTGGAGGAGCAGGAGGTGGCATCAAGCTGAATCCCCTCGAGACACTCAGCCTTCTGTCGGGCATGCAGTTTCAAGTGGCACGCAACGGCACCGGCGCCAACGGCGAGCAGCAGTTGATTGTCAATCTGGCCCTGAACGGCATTAAGTACTCGGGTGTCCTGGTGGCCAATGCAACGCGGCCGGCGTGCACCGAAGAAGCCGACACGCCCACCACGGCCGCCAGCAACGAGGAGAGAGTGGAGGCGGAGACCgaggcggaggaggaggagtcGGAGGAGGCCAAGCACGAGAGCCGAGAGGAAGAGCCCAACGAGGAGgaaacacagcaacagcagtccACGGATGACATTGGCAATGGCACGGGAAttgcgggtgcgggtgcgggggGCAATGAAGTTGGAGGTGGAAGCGTGGGCGTATCCCTGCTTAAAGATGCTGTGGTCAGTTCATAA
- Protein Sequence
- MCHDVIATKKMEVLTEKRQRTAKAKAEAVATKLSQEPDSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSAFPLTHNPVAAAAAAASFGHAAASVTVPSASNGNSYNGAASGAANVQAGVTAASAAASNNGTNNGGGAGGAGGTGGANNNNNNNNNAAASGHPFSFASPTAPSAKEARQFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPQLPGGMQQMSPLALVTHAAAATNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQNAPGPHTHQQQQQQQQQQQQQQQSLHHHQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPADIEETAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQANSNNNNNNSSSHLNHHHHHQQQQQQQQHQDAASDGEPEDDFANADHNTTGNSSSMQEDIEPPQLNGHHHHHHHDDHHDHHDHHHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKANNKEDNCTGSVSSSGGAGGGIKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLALNGIKYSGVLVANATRPACTEEADTPTTAASNEERVEAETEAEEEESEEAKHESREEEPNEEETQQQQSTDDIGNGTGIAGAGAGGNEVGGGSVGVSLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560821;
- 90% Identity
- iTF_00560821; iTF_00541558; iTF_00567319;
- 80% Identity
- -