Dmea009720.1
Basic Information
- Insect
- Drosophila melanica
- Gene Symbol
- retn
- Assembly
- GCA_004143765.1
- Location
- SCDT01000363.1:4973-32239[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3e-26 1e-22 80.5 0.0 2 89 314 399 313 399 0.96 2 3 1.4 4.7e+03 -1.8 0.3 11 41 546 584 528 598 0.56 3 3 3 1e+04 -2.8 0.4 57 82 663 689 659 700 0.69
Sequence Information
- Coding Sequence
- atgaacaaattgttaattaacaaGCAGCAGGAGCCGATCTCAATACCGATCAGGCACCATCAGTCCCACGGCGATCGTACGGATGACGAGATGCGCGACTGCGACTCCGTCGACGGTGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCAGCGCGCCTCAGTCACACAGTCGCCGGCGGCGCTGGCCTCAACTTTGCCAGTCCGGAGCAGCAAACAGATCTGCCACTCAGcCATCATCACCAACTGCCGCCGAATCATCCGCTTAATGCGCTGGGCAGTTTCATGGGCATCAGCGGCCTACACAGCATTCCAAATCTGCAGCACAGCGATGTTCTCGAGAAGCTCAAGATGCAAGTGCGAGACATGAAAGTGGGCCTCATGGAACAGGATTATGCAGCGGCGGCGCACGCAGCCGCCTTTGGCGCCAACATGCTGCCGACCACCATCAGCAGCGCCTTTCCGCTGACCCACAATCCGGTGGCGGCGGCCGCGGCAGCCGCATCCTTTGGCCATGCGGCGGCGGCCAGTGTGACCGTACCGCCAGCGAGCAATGGTGCCAGCTACAATGGCGCCGCCAGTGGAGGCCCAAATGTTCAGCCGGGAgtaactgcagctgcagcaattggCAGCAGTGCCAGCAACAATGGAACAAACGGTGGCGGCAcaggtggtggtggtggcagtGCAGGTGGTGGTGGTACCGGCAgtggtggcaacaacaacagcaacaatgccgCGGGCAGCGGGCATCCCTTCTCGTTTGCATCGCCGACAGCGCCGAGCGCCAAAGAAGCGCGCCAATTTACAGCTAATTCGGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGTTGTATGAAATCAACGATGATCCCAAGCGCAAGGAGTTTCTCGAcgatttgttttcgtttatgCAAAAGCGCGGCACGCCCATCAATCGCCTGCCCATTATGGCCAAATCGGTGCTGGATCTGTACGAGCTATATAATCTGGTGATAGCGCGCGGCGGACTTGTCGATGTTATCAACAAGAAGCTTTGGCAGGAGATAATCAAAGGACTCCACCTGCCGTCGAGCATAACCAGTGCCGCATTCACATTGCGTACACAATACATGAAGTATCTGTATCCGTACGAGTGCGAGAAGAAGAACCTCAGCACACCAGCCGAGCTGCAAGCGGCCATTGATGGCAACCGGCGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCACTGacGCCCATTTCGCGGCCGCAGCTGCCTGGTGGCATGCAACAGATGTCGCCGTTGGCACTGGTCACACACGCCGCGGCGGCCACCAATCAGCAGGCGCAGGCAGCGgccgcggcagcggcagcgcacCGCCGACTGATGGGCGGACCGCCGTTTGGCCAGATGCCGAATCTGGTGACGCAGGAGATCGAGAACCGGATGATGGAGTATCTGCAGCTGATACAGGCCAAGAAGGAGCAGAGTGCGTCAGTGCCACAcacccaccagcagcagcagcagcagcaacagcagcagcagcaacaacagcagcagtcgctgcaccatcaccagcaacagcagcagcagcagcagcggcagcgttcGCAAAGTCCCGAGCTGAGCACGCGCGATGCGCTCAGTGCACAGGTGGCGCTGTGGCACATGTATCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAGCGCGAAGCTTTGAACCTCTCCGATTCGCCGCCAACTCTCAATTTGAACCACATAAAACGGGAACGCGAACGCGATCCAACGCCGGAGCCGGCGGATAACGAGGAGACGGCACACCAGCCGCCGCCGGCAAAACGTGTGGGCAGCGGCCTGATGCCGCCCGGTTTTCCCGccaatttctatttaaatccACACAATATGGCCGCCGTTGCAGCCGCCGCGGGCTTCCATCACCaggcgaacagcaacaacaacagcagcaaccacctgaaccaccatcatcaccatcagcagcagcagcagcagcaacagcaacagcagcagcagcagcagcatgatgCAGCATCCGATGGCGAACCAGAGGATGATTTCGCCAATGCGGAGCACAACACAACCGGGAATTCGTCGTCCATGCAGGAGGACATTGAGCCGCCGCAGCTGAATGGACACCACCATCATCACCACCATGACGACCACCATgaccaccatcatcatcatcatcaccatcagaACCATCTGGACAAATCGGATGACTCGGCCATTGAGAACTCGCCCAGCACCTCCACAACGGCATCGGCGTCGGGCGGGCACCGCCACAGCTCGCCGGTGTCCACCAAGAAGAAGCCCAGCAAGGAGGACAACTGCACGGGCAGCGTgtccagcagcggcggcggtgtgGGCGGCATCAAGCTGAATCCCCTCGAGACACTCAGCCTGCTGTCGGGCATGCAGTTCCAAGTGGCACGCAACGGCACCGGCGCCAACGGCGAACAGCAGTTGATTGTCAATCTGGCCCTGAACGGCATTAAGTACTCGGGTGTCCTGGTGGCCAATGCGGCCCGGCCAGCGTGCACCGAGGACGCCGACACGCCCGCCacggccgccgccgccagcgagGAGCCAGCGGAGGCGGAggccgaggaggaggaggagttgGAGGAGGCCAAACACGAAAGCCGAGAGGAGGAGCCCAACGAGGAGGAAACAGCACAGGAACAGCAGACCACGGATGACATTGTCAATGGCGGCAGTTTAGGAACGGGAattgcgggtgcgggtgcgggggGCAAtggaagtggaagtggaagtgTGGGCGTATCCCTGCTTAAAGACGCTGTGGTCAGTTCATAA
- Protein Sequence
- MNKLLINKQQEPISIPIRHHQSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGISGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSAFPLTHNPVAAAAAAASFGHAAAASVTVPPASNGASYNGAASGGPNVQPGVTAAAAIGSSASNNGTNGGGTGGGGGSAGGGGTGSGGNNNSNNAAGSGHPFSFASPTAPSAKEARQFTANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPQLPGGMQQMSPLALVTHAAAATNQQAQAAAAAAAAHRRLMGGPPFGQMPNLVTQEIENRMMEYLQLIQAKKEQSASVPHTHQQQQQQQQQQQQQQQQSLHHHQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPADNEETAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQANSNNNSSNHLNHHHHHQQQQQQQQQQQQQQQHDAASDGEPEDDFANAEHNTTGNSSSMQEDIEPPQLNGHHHHHHHDDHHDHHHHHHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKPSKEDNCTGSVSSSGGGVGGIKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLALNGIKYSGVLVANAARPACTEDADTPATAAAASEEPAEAEAEEEEELEEAKHESREEEPNEEETAQEQQTTDDIVNGGSLGTGIAGAGAGGNGSGSGSVGVSLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560821;
- 90% Identity
- iTF_00547140;
- 80% Identity
- -