Dneo013175.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila neotestacea
Gene Symbol
sip1
Assembly
GCA_035044365.1
Location
JAWNMD010000401.1:1409391-1412075[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.3e-98 2.4e-94 316.2 15.0 2 275 423 693 422 693 0.97
2 2 0.37 3.8e+03 -2.6 0.0 245 269 708 732 699 745 0.65

Sequence Information

Coding Sequence
ATGTCGGACAATGAATATGAACGCTTTGAAATCACAGACTATGATCTGGACAATGAATTCAACATAAACAGACCCCGCCGGCGTCACACCAAGCATCAGCAAATTTATGGCATTTGGGCGGACGATAGCGACAATGAGAGTGAGGGTGAGAGCAGCGGGCGACGTGGACGTCGTGGTTTAGGAGGTGGAGCTACTGGAAAATCAAAGGATTACACAGCGCCTGTAAATTTCGTAGCTGGCGGTATTCAGCAAGCCGgcaagaaacaaaagaaaaagcagGAGGAAAACGTGGGTAGCGATGAGGAGGGGAGCGATGCAGATGATAGCGATGAGACGCGTCCTTCTTTTGGACGCAAACAACCGCAGCTAATGGACAATAGCGATGCCAATAGCTCTGACAGTTCGGCAGGAGCGGAAGAGCATCAGCGAAAGGCTGCAATGACGACACACAACACAGCAGGACTTAGGCATAAATCTCATATTCCGAGTAATCGAAATGTGGGTGCCTGGGAACAGCATACGCGTGGCATTGGCGccaagctgctgctgcaaatgGGTTACGAGCCCGGCAAGGGTTTAGGCAAAGATTTGCAGGGTATCTCACAACCGGTACAAGCCCATGTGCGTAAAGGACGAGGTGCTATTGGCGCCTATGGACCAGAGACTGCAGCTAGCGTGGGTGGACAAGCAAAACCTCTGAAAATAGATGAGGACGTCAAGGAGGCCAAAGAGTTTAAGGAGCAACTTAATAAATGGAAGAAAGGCGGTAACGAAACTCGTGAAAAATCTACCAAGCGATACTACTACAAGTCGGTGGAGGAAGTCATTGCCAAGGGCAAGAAATCAGATCATTTGCTGTCTGAGAAGCTGAGCAAGCGCCTAGGAAATGTTCCAGTAATAGATATGACTGGACCAGAGCGACGTGTGCTCAGCGGATATCATGCCTTGGCCCAGAACAAAATAACGCCCGATGAGACGCTCTACGATGCGCAGGGAAGTGAAGAGAAGGGAGAGAAGAGCACTCCCGTCTCCATATTCAGCATGCCCGAACTAACGCACAACCTGCAGCTGCTGGTGAGCCAATGCGAACAGGAGATCATTGCTATTGACAAAACAGAGCGTGAATGTTCGGATCGTCAAGCAGGTTTGGAGcatgaacagcagcagctgcttgaACTGGTGCAATTGGAACGTAATCACATGACCACGCTGCAAGCTGCGCTGGCTCGTCTTGATCAGCTCAGCGAGAACCCGGAGTTAAGTCTGACCCAGGCGGAAAATTTGTTTCTCGAGCTGCAACACGACTATGCGGCAGAGTACAAGGAGTTTGGATTGGCCGATCTGGCAGCTGGTGTTATAGCTCCTCTCCTAAAACGGGAGCTTAGCGAATGGCAACCATTGCAGCAGCCGACGCAGCCATTACAGCTAATCAAGCGATGGCGTGGCATATTGCAGCAGGATGGACAAGAGGTGTCCGAGCAACAATCCCGCAATGTCTTCGATCCCTACTCCTCGCTCATCTGGGCCGGTGTGATGCCCTCGTTCAGAGCCTGCGCCGCCAGCTGGCAGCCAAAGGAGCATGCACCAATGGCAGCTTTGTTGGACGCTTGGGCGCCTCTGTTGCCCACTTGGGTGCTTGACTCGGTGCTGGAACAGCTTGTGCTGCCTCGACTAACAATAGGCGTCAGCGAGTGGGATCCTTTAACCGATACTGTGCCCATACACAGTTGGATTTTGCCATGGCATGGCATACTGGGAGCCAAATTAGAGGAGTCCATCTATCCACAGATCCGTAGCAAGCTGGGCGTCGCCCTGCAGGCGTGGTCACCACAGGATCGATCAGCACGCGCCATGCTAACGCCTTGGCAAACGGCCTTTGCAGAGGAGCAACTAGTTCAGTTCCTGCTACGTCACATTATACCCAAGCTGCAGGCGGTGCTCGCTGAATTTGTGATCAATCCGTTGCAACAGAATCTGGAATTGTGGCATCAGGTGTGGGAGTGGAATGAGCTTATACCTTCCCATCACATGGCTCAACTGCTGGACAAACATTTCTTCCCACGCTGGATGCAGGTTCTCGTCATGTGGTTGAATCAATCTCCGGATTATGCGGAAATCTCTCGCTGGTATGCCGGCTGGAAGAGCATGTTTAGTGAGGCGATACTTCGAGAGCCTTGCATCAAGGAGCACCTACGTCGTGCTCTCGACATGCTGCACCGTGCAACCGATGCAGTGCTGCAAACAACCtctgcaccaccaccacccatGCCACCAGCACCCGCTCCTGTCCTCCTCACACCTGTGATGCTTGTCGATGTAGCGCCTGCTCAAATAGAATTTAAGGAGCTCGTCTCACAGAAATGCGCCGAATTGGGCATCATATTTGCCCCACTGCCAGGCCGACGCGAACTTGGCAAACAGATCTACCGCGTTGGGAAGCTCTTCTGCTACATCGATCGTAATGTGTGCATGCTGAGCGACAGCAGCTTTTCAAATTGGCAACCCGTGGGACTTAATCAGTTGCTGGAGCGGGCACAGACTGGACTCctttaa
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRRRHTKHQQIYGIWADDSDNESEGESSGRRGRRGLGGGATGKSKDYTAPVNFVAGGIQQAGKKQKKKQEENVGSDEEGSDADDSDETRPSFGRKQPQLMDNSDANSSDSSAGAEEHQRKAAMTTHNTAGLRHKSHIPSNRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASVGGQAKPLKIDEDVKEAKEFKEQLNKWKKGGNETREKSTKRYYYKSVEEVIAKGKKSDHLLSEKLSKRLGNVPVIDMTGPERRVLSGYHALAQNKITPDETLYDAQGSEEKGEKSTPVSIFSMPELTHNLQLLVSQCEQEIIAIDKTERECSDRQAGLEHEQQQLLELVQLERNHMTTLQAALARLDQLSENPELSLTQAENLFLELQHDYAAEYKEFGLADLAAGVIAPLLKRELSEWQPLQQPTQPLQLIKRWRGILQQDGQEVSEQQSRNVFDPYSSLIWAGVMPSFRACAASWQPKEHAPMAALLDAWAPLLPTWVLDSVLEQLVLPRLTIGVSEWDPLTDTVPIHSWILPWHGILGAKLEESIYPQIRSKLGVALQAWSPQDRSARAMLTPWQTAFAEEQLVQFLLRHIIPKLQAVLAEFVINPLQQNLELWHQVWEWNELIPSHHMAQLLDKHFFPRWMQVLVMWLNQSPDYAEISRWYAGWKSMFSEAILREPCIKEHLRRALDMLHRATDAVLQTTSAPPPPMPPAPAPVLLTPVMLVDVAPAQIEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLSDSSFSNWQPVGLNQLLERAQTGLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00476613;
90% Identity
iTF_00533792;
80% Identity
-