Dnav005407.1
Basic Information
- Insect
- Drosophila navojoa
- Gene Symbol
- MBD2
- Assembly
- GCA_001654015.2
- Location
- NW:102198-104176[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.2e-23 2.8e-19 68.0 0.1 1 74 9 77 9 80 0.93 2 2 3.9e-06 0.012 14.7 0.1 26 76 175 234 156 235 0.88
Sequence Information
- Coding Sequence
- ATGCAAATGAATCCGAACATTACAATTGAAAGAAAACGCGTTGATTGCAACGCATTACCAAAGGGCTGGCAGCGCGAAGAAGTGCATAAGAAATCTGGTTGCAACACGGGCGTTGATGTGTTCTACTACAGCCCGACAGGCAAACGAATCGAGAGTAAACCACAATTAGCACGCCAATTGAATACCGAAATGTTTGACATCAGTAACTTTGATTTTCAAACtggcaaaatgcaaacacaacgACAAATGCCCTCGCCATCCATATCGTTGTATCGTTGCAATGCAGCGGGCGCCATTATCGGCAATGCTGGCCCAGGCGTAAACCCTGCTAATGCTCTAAAGCGTAAATACAGCCGAGCTCAAACGCAAGGCTCCGCAtccaacaacatcaacagtgGGGGAATTGCAGCATCGATAACAGCAGTGCCATCGATAACCGCAGCGACGGCAACTAATttacgccagcagcagcaacagcaacagcagcaacaacaacagcaacaacaacaacaacttgattTCAGCCGCAATTTGCGCACAGATGTCTCCCTGGTGCCACCTATACGACAGACAGCTTCAATTTTCAAACAACCGGTGACGGTTATCCGCAATCATGAGCCGAGCAAAGTGAAGCACGATGTTAAGCACGGCGGTCAGGAGAAGCCAAAACAATTGTTCTGGGAGAAGCGTTTGGAGCGCTTGCGTGCCTGTCATGACAACGGTGAAGAGCTTGACGATATATCACTGCCAAAAACAATTCGCACCGTTGGCCCTAATGTCAACGAACAGACCGTATTGCAGTCGGTGGCCACCGCCTTGCACATGCTCAATGCCGGCGTACATGGTCAGAGTTCGACAAAGGCTGATCTAACGAAGAATGCCATGGCATTCATGAATCCCGAACAGCCTCTAATGCATGCGGTAATCATCTCCGAAGACGATATTCGCAAGCAGGAGGATCGCGTGGGAGTGGCACGAAAAAAACTCCAGGAAGCGCTCAAGACATGA
- Protein Sequence
- MQMNPNITIERKRVDCNALPKGWQREEVHKKSGCNTGVDVFYYSPTGKRIESKPQLARQLNTEMFDISNFDFQTGKMQTQRQMPSPSISLYRCNAAGAIIGNAGPGVNPANALKRKYSRAQTQGSASNNINSGGIAASITAVPSITAATATNLRQQQQQQQQQQQQQQQQQLDFSRNLRTDVSLVPPIRQTASIFKQPVTVIRNHEPSKVKHDVKHGGQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKADLTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGVARKKLQEALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00593092;
- 90% Identity
- iTF_00532362;
- 80% Identity
- -