Basic Information

Gene Symbol
-
Assembly
GCA_035047565.1
Location
JAWNPK010000049.1:9151511-9151972[-]

Transcription Factor Domain

TF Family
zf-LITAF-like
Domain
zf-LITAF-like domain
PFAM
PF10601
TF Group
Zinc-Coordinating Group
Description
Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3e-27 3.2e-24 85.0 11.5 2 70 60 129 59 129 0.97

Sequence Information

Coding Sequence
ATGAGCAAGTCTACGGGCAATGCGCCGCCGTTCACATACGTTCCACCGCCATCGGCGCCCCCATCCTATCTGGAGGCCGTTGGCGGGGTGAAGCCTGTTGGTCCATACACGCCAGTTGTAGCGCCTGCTACCGCCGGGGGTACAAATATATTGACGACAGTTGTGCCCATTGGACGGACATCCACACACATGATATGTCCCTCATGCCATGCGGAGATTGAGTCGACAACACGCACAGAGCCGGGCATGATTGCCTATTTGTCCGGTTTTGTTATTGCGTTGCTGGGttgctgGCTGGGTTGCTGCTTGATACCTTGTTGCATTGATGACTGCATGGACGTACACCACACGTGCCCCAACTGCAAGGCATATTTGGGACGCTATCGGCGATAA
Protein Sequence
MSKSTGNAPPFTYVPPPSAPPSYLEAVGGVKPVGPYTPVVAPATAGGTNILTTVVPIGRTSTHMICPSCHAEIESTTRTEPGMIAYLSGFVIALLGCWLGCCLIPCCIDDCMDVHHTCPNCKAYLGRYRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00479843; iTF_00532773; iTF_00599973; iTF_00494054; iTF_00545639; iTF_00473449; iTF_00559882; iTF_00549932; iTF_00509486; iTF_00573710; iTF_00516659; iTF_00544883; iTF_00554741; iTF_00540758; iTF_00477015; iTF_00521015; iTF_00510201; iTF_00568636; iTF_00587068; iTF_00486241; iTF_00596321; iTF_00567202; iTF_00560707; iTF_01322307; iTF_00610308; iTF_00498533; iTF_00542821; iTF_00495527; iTF_00584839; iTF_00535720; iTF_00574472; iTF_01321576; iTF_00502186; iTF_00528459; iTF_01323051; iTF_01326059; iTF_01326828; iTF_01328268; iTF_01556492; iTF_00565037; iTF_00593517; iTF_01325325; iTF_00583344; iTF_00599248; iTF_00497809; iTF_00522609; iTF_00525553; iTF_01324562; iTF_00511668; iTF_00559156; iTF_00553429; iTF_00806357; iTF_00497046; iTF_01320854; iTF_00499255; iTF_00513847; iTF_00570775; iTF_00611064; iTF_00482650; iTF_00576730; iTF_00577434; iTF_00597818; iTF_00552700; iTF_00557564; iTF_00607484; iTF_01327548; iTF_00499965; iTF_00500701; iTF_00514557; iTF_00616574; iTF_00521823; iTF_00620255; iTF_01323775; iTF_01555103; iTF_00517376; iTF_00544128; iTF_00549216; iTF_00805633; iTF_01550657; iTF_00534978; iTF_00561410; iTF_01356514; iTF_00519587; iTF_01558691; iTF_00513124; iTF_00803268; iTF_01557222; iTF_01560103; iTF_00563561; iTF_00576009; iTF_00602249; iTF_00534250; iTF_00491179; iTF_01554348; iTF_00471277; iTF_00523341; iTF_00586349; iTF_00617293; iTF_00804045; iTF_00529231; iTF_00551247; iTF_00507280; iTF_00547728; iTF_00567922; iTF_01552115; iTF_01557942; iTF_00530615; iTF_00531351; iTF_01549943; iTF_01551384; iTF_00542105; iTF_00506522; iTF_00508762; iTF_00510939; iTF_00475613; iTF_00479166; iTF_00526974; iTF_00569375; iTF_00587807; iTF_00589215; iTF_01553631; iTF_00585632; iTF_01552832; iTF_00582626; iTF_00584098; iTF_00608851; iTF_00558326; iTF_00538627; iTF_00579652; iTF_00520296; iTF_00598545; iTF_00572982; iTF_00496251; iTF_00502912; iTF_01555788; iTF_00537901; iTF_00901903; iTF_01570612; iTF_00547031; iTF_01559419; iTF_00832574; iTF_00493312; iTF_01322306; iTF_00595620; iTF_00614575; iTF_00589919; iTF_00352240; iTF_00625181; iTF_01315156; iTF_00332001; iTF_01194946; iTF_00371811; iTF_01162757; iTF_00200422; iTF_01075046; iTF_01166247; iTF_01177480; iTF_00742442; iTF_00921770; iTF_00998218; iTF_01236330; iTF_00045805; iTF_00976109; iTF_01237325; iTF_01374637; iTF_00350671; iTF_00655760; iTF_01313424; iTF_01377138; iTF_00259443; iTF_01238228; iTF_00260342; iTF_00760663; iTF_01261560; iTF_00893529; iTF_00922585; iTF_01109787; iTF_01400027; iTF_00717372; iTF_00905084; iTF_01399134; iTF_01202143; iTF_01315999; iTF_01314336; iTF_00191041; iTF_01045903; iTF_01564207; iTF_01563351; iTF_00191737; iTF_00193977; iTF_00192476; iTF_00190365; iTF_00594913; iTF_00594211; iTF_00526244; iTF_00565764; iTF_00609540; iTF_00590629; iTF_00541446; iTF_00572264; iTF_00606729; iTF_00483338; iTF_00478381; iTF_00562125; iTF_00491886; iTF_00490448; iTF_00489042; iTF_00524786; iTF_00489747; iTF_00492628; iTF_00618004; iTF_00613173; iTF_00485526; iTF_00533464; iTF_00527707; iTF_00532029; iTF_00480544; iTF_00613856; iTF_01195681; iTF_01196372; iTF_01055639; iTF_00336386; iTF_00337990; iTF_01320135; iTF_00339568; iTF_00338806; iTF_00337175; iTF_01319421; iTF_00476290; iTF_00504355; iTF_00481895; iTF_00546319; iTF_00550609; iTF_00580340; iTF_00615255; iTF_00566456; iTF_00615867; iTF_00477692; iTF_00488381; iTF_00539325; iTF_01232099; iTF_01415491; iTF_01181580; iTF_01115397; iTF_00747146; iTF_00750124; iTF_00747885; iTF_00748653; iTF_00750895; iTF_00749363; iTF_01114677; iTF_00384958; iTF_00062406; iTF_00063244; iTF_00474886; iTF_00611725; iTF_00601426; iTF_00603741; iTF_00564318; iTF_00258535; iTF_00915883; iTF_00919548; iTF_00919549; iTF_00798248; iTF_00581193; iTF_00474180; iTF_00575236; iTF_00914981; iTF_00618822; iTF_00481223; iTF_00591369; iTF_00578187; iTF_00484109; iTF_00503662; iTF_00917710; iTF_00536431; iTF_00555503; iTF_00916849; iTF_00588530; iTF_00600722; iTF_00484787; iTF_00804851; iTF_00571572; iTF_00604503; iTF_00524088; iTF_00487673; iTF_00501468; iTF_00515261; iTF_00518110; iTF_00472032; iTF_00612480; iTF_00556235; iTF_00505068; iTF_00512385; iTF_00515914; iTF_00608106; iTF_00548461; iTF_00543406; iTF_00581934; iTF_00537169; iTF_00507988; iTF_00529940; iTF_00494773; iTF_00605238; iTF_00486969; iTF_00605979; iTF_00578944; iTF_00818031; iTF_00890639; iTF_01019889; iTF_01378881; iTF_00967730; iTF_01051602; iTF_00359891; iTF_01405363; iTF_01471027; iTF_01133388; iTF_00918708; iTF_00061590; iTF_00352695; iTF_01427147; iTF_00251736; iTF_01364302; iTF_00680184; iTF_01174744; iTF_01259751; iTF_01201272; iTF_00366895; iTF_00680185; iTF_01232101; iTF_00817082; iTF_01023514; iTF_00817083; iTF_00818033; iTF_01358556; iTF_00993166; iTF_00891517; iTF_00979773; iTF_00193216; iTF_01486816; iTF_00892370; iTF_00972727; iTF_01506016; iTF_01427961; iTF_00901146; iTF_00900208; iTF_00436148; iTF_01398100; iTF_00081802; iTF_00304202; iTF_00091857; iTF_01190003; iTF_00083576; iTF_00082586; iTF_00562845; iTF_00472720;
90% Identity
iTF_00581193;