Dsia013303.1
Basic Information
- Insect
- Drosophila siamana
- Gene Symbol
- -
- Assembly
- GCA_035047445.1
- Location
- JAWNPP010000138.1:162450-162923[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6e-27 6.3e-24 83.7 11.8 2 70 60 129 59 129 0.97
Sequence Information
- Coding Sequence
- ATGAGCAAGTCTACAGGCAATGCGCCACCATTCACATACGTTCCACCGCCATCGGCACCTCCATCGTATAATGAGGCCGTTGGTGGGGTCAAGCCCGTCGgtccatacacacacattgtgGCGCCATCTACCGCTCCGGGCACAAACATATTGACAACCGTGGTTCCCATTGGACGCACATCGACACACATGATATGCCCCACGTGTCATGCGGAGATTGAATCAACGACACGCACGGAGCCCGGTATGATTGCCTATCTATCCGGTTTTGTAATCGCATTGGTTGGTTGCTGGCTAGGTTGCTGTTTGATACCTTGTTGCATTGATGACTGCATGGACGTGCACCACACTTGTCCCAACTGCGGGTCTTATTTGGGACGCTATCGACGATAA
- Protein Sequence
- MSKSTGNAPPFTYVPPPSAPPSYNEAVGGVKPVGPYTHIVAPSTAPGTNILTTVVPIGRTSTHMICPTCHAEIESTTRTEPGMIAYLSGFVIALVGCWLGCCLIPCCIDDCMDVHHTCPNCGSYLGRYRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00551970;
- 90% Identity
- iTF_00614575; iTF_00589919; iTF_00486241; iTF_00596321; iTF_00805633; iTF_01550657; iTF_00534978; iTF_00561410; iTF_00567202; iTF_00582626; iTF_00584098; iTF_01322306; iTF_01356514; iTF_00519587; iTF_00538627; iTF_00560707; iTF_01322307; iTF_01558691; iTF_00513124; iTF_00610308; iTF_00803268; iTF_00498533; iTF_00542821; iTF_01557222; iTF_00495527; iTF_00584839; iTF_01560103; iTF_00520296; iTF_00535720; iTF_00574472; iTF_01321576; iTF_00563561; iTF_00576009; iTF_00602249; iTF_00502186; iTF_00534250; iTF_00491179; iTF_00528459; iTF_01323051; iTF_01326059; iTF_01326828; iTF_01328268; iTF_01554348; iTF_01555788; iTF_01556492; iTF_00471277; iTF_00523341; iTF_00537901; iTF_00565037; iTF_00586349; iTF_00593517; iTF_00617293; iTF_00804045; iTF_01325325; iTF_00529231; iTF_00551247; iTF_00507280; iTF_00547728; iTF_00583344; iTF_00599248; iTF_00497809; iTF_00522609; iTF_00525553; iTF_00598545; iTF_00567922; iTF_01324562; iTF_00608851; iTF_01552115; iTF_00511668; iTF_00559156; iTF_01570612; iTF_00553429; iTF_00806357; iTF_00497046; iTF_00558326; iTF_01320854; iTF_01557942; iTF_00499255; iTF_00513847; iTF_00530615; iTF_00531351; iTF_00570775; iTF_01549943; iTF_00611064; iTF_01551384; iTF_00542105; iTF_00482650; iTF_00506522; iTF_00508762; iTF_00576730; iTF_00577434; iTF_00597818; iTF_00496251; iTF_00510939; iTF_01559419; iTF_00552700; iTF_00557564; iTF_00607484; iTF_01327548; iTF_00475613; iTF_00499965; iTF_00500701; iTF_00514557; iTF_00479166; iTF_00526974; iTF_00616574; iTF_00832574; iTF_00521823; iTF_00569375; iTF_00587807; iTF_00589215; iTF_00620255; iTF_01323775; iTF_01553631; iTF_01555103; iTF_00493312; iTF_00502912; iTF_00517376; iTF_00544128; iTF_00549216; iTF_00585632; iTF_01552832;
- 80% Identity
- -