Dmer012466.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila meridionalis
Gene Symbol
PAXBP1
Assembly
GCA_035045145.1
Location
JAWNPG010000037.1:11016617-11020426[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.8e-30 1.8e-26 93.5 1.5 4 272 655 862 652 864 0.94

Sequence Information

Coding Sequence
ATGTCGCTATTTCGCAAGCCTAAGAAAATACAGCGGCGGGTCTTCTCCAGCAATGCagacgaggacgaggatgtGTCGGCTGTGGAAATCCATGGAGATTTGGAAACGCCCCCACCCCCGCCGCCAATAATCTCGTCGTCCGGCAAACGTGACAAggataaaagcaaaaaaacagtTCGACAAACCGATGACAGTGGAACAGTATCCGGCGGCGCTGCCGTCCAACACAAGCCAAAGGCTTTGCTCAGCTTTGCTGACGATGAGGACGACGGAGAAGTGTTCCAAGTGCGCAAATCGTCGCACAGCAAGAAAGTCATGCGAATGCTGGACAAGGAGCGTCGCAAAAAGAAGCGCGAGGAGCGAGCGGAAATAACGGGACACAGCGGACACGTTGGTTATGAGAATGGTAGTAATACACAGCATTTAGAGTCGTCCAGTGCCACTTCGGCGCCGGCCTTGGCCTCGGCTTCGGgttctggtgctgctggttcAGCCAATCTCTCTagtagatataaatatactgcGATAGCTAGCGACAATGCGAGCGaacaaagtaaaagtaaaaagtgTGATAATGATATGATCCAAACCGAAATACGCACAGACGACTTTGTGCTTGTCGTCAAGAAATCTGAAACTCCTGATGTGCTCTTAAATGGACGCGCCGCGCTCTGTGCTGGTCGCGATGATATGAGTGATGATGACGAATTTGAAGACAGAGAGAACGATAGGACGCGGCATCGCTTCTCAAAGCCGGAGCACTTGAAGCAAATGCTGGAAAGCGGCTCCATACCAGACGCAGCAATGATACATGCTGCACGCAAGCGTAGGCAGCGGGCCAGGGAACAAGGAGCTATTGATTACATACCCGTCGAGGAGCCGAAGGAAACGCCGAAGCTGAGCACGCGTTTGCCGCGCGAGGACGTTGAGGGCGATCAGTCGGACGATGAGGAGCGCATGGATATGAACGACATAACGGGTCGCAAGGAGCGTGAAGAGCGCCGCGAACAGTTCTATGCCGTTGAGAATGATTTGACTGAGGAAGACTCCGATCGCGAAATGCACGAATGGGAGAATCAGCAAATACGAAAGGGCGTCACGGGCGCCCAACTTGTTCATGCTCAGCATGAGACTGTGCTATCGCGGTTCATGATCAAGCCGGCGACGAACAGTGGAGTGGATGATGGAGCTTTCGAGTTGGGCCTGGATCCAGTGCCGCCATCGACTGCGACTCTGCTGGAGCAGGCCTATGCAAAGACCAACCTCGACAAGAATACAGTCGCGGCAGCCACTATCCGTTCCGCTCTCAACAAAGCCAAGCGAGAGAAAACGAAGGCCACGGCGCTGCGTACCCCGCAGGAGATGCGCTCCACGATTGTAATGCGTCTCACAGAGCTGCGGGAGCGGAACGATGAACACAATGCCAGCATCACTCGCATCGAAGCGGAGCTGAAATCTCTGAAGCTGCAGCAGACCGAATGCAAACAGAATGCGCCAGCGGCGGCggctaaatataaattctatcAGGAGATCAAATGCTATGTGAACGATTTGATCGATTGCCTGGCGGCCAAATCTCCGCTAATCAATGATCTGGAAAAACGCGCTCTGCAGCTCTACAGCAAAAATCAGCGCTATTTGGTCAATCGGAGGCGGCAGGATGTCCGCGATCAGGCCAAGGAAATGGCGGAGGCTGCAAAGCCTGTGCTAGCAGCGGCGCGCCGAACACCGGAGTACGAGGAGCAAGTGCGTCGAGCAGCGGAGCGGGAAGGCCGACGCACGCGCCGACGTTGCGAACGTGAGCGAAACTACTTGTTGGCCACACATTTAGATGGCATGTCCAGCGACGACGAGATTGCCgatcaacagcaggagcagggcTTAGCAATGAAGGCGTTGATCGAAACGCAAGCAGCGGAGGCCTTTGAGGACGTCAACGATGATTTCTGCAAAATCGATCTAATACTCATGAAGTTCTACGCATGGCGTAAGACGGACATGAGCTCGTATCAAGACGCCTTTGTCAGTCTCTGTCTGCCCAAACTGCTTGCGCCACTGGTGCGTCACGAGCTGCTGCTCTGGTCGCCGTTGCTGGAGGAATATACGGACATTGAGACAATGCATTGGTATCAAGCCTGCATGCTTTACGCCTGCCAGTCGAATGAAACGGTTGAACAACTCAAGGAGGACCCAGACCTCAACCTTGTGCCTTCTCTCATAGAGAGGATTGTGTTGCCCAAAGTGAATTctCTGGTCGCGGAATGCTGGGATCCATTGTCCACGACACAGACGCTACGTCTTGTCGGCTTCATCAATCGCCTGACTCGCGAATTCccgctcagcagcagcaacaagcagctGAAAAAGCTTTTCGAGTCAATTATGGAACGCATGCGACTCGCACTCGAAAACGATGTGTTCATACCCATCTTTCCAAAACAGGTGCAAGAGGCGAAGGGATCGTTCTTTCAGCGTCAGTTTTGCAGCGGGCTTAAACTGTTTCGTAACTTTCTGAGCTGGCAGGGCATACTGGCGGACAAGCCCTTAAGAGAGCTGGCTATTGGAGCTCTTCTGAATCGCTACCTACTGATGGCCATGCGCGTGTGCACCCCAAATGATGCTATTAGCAAAGTCTCCATTATTGTTAATACCCTACCAACGGTGTGGTTGCTGACCAACAGCGATACACTGAAGAATTTGGAGGTATTCATTAGTTATATAAAGCAAACGTTGGACAATTGCGATGCAACCAACCCACTTCTTATGCAATCCTGCGACAAGGCTAAGCAGATACTACAAAGACTACATAgcttataa
Protein Sequence
MSLFRKPKKIQRRVFSSNADEDEDVSAVEIHGDLETPPPPPPIISSSGKRDKDKSKKTVRQTDDSGTVSGGAAVQHKPKALLSFADDEDDGEVFQVRKSSHSKKVMRMLDKERRKKKREERAEITGHSGHVGYENGSNTQHLESSSATSAPALASASGSGAAGSANLSSRYKYTAIASDNASEQSKSKKCDNDMIQTEIRTDDFVLVVKKSETPDVLLNGRAALCAGRDDMSDDDEFEDRENDRTRHRFSKPEHLKQMLESGSIPDAAMIHAARKRRQRAREQGAIDYIPVEEPKETPKLSTRLPREDVEGDQSDDEERMDMNDITGRKEREERREQFYAVENDLTEEDSDREMHEWENQQIRKGVTGAQLVHAQHETVLSRFMIKPATNSGVDDGAFELGLDPVPPSTATLLEQAYAKTNLDKNTVAAATIRSALNKAKREKTKATALRTPQEMRSTIVMRLTELRERNDEHNASITRIEAELKSLKLQQTECKQNAPAAAAKYKFYQEIKCYVNDLIDCLAAKSPLINDLEKRALQLYSKNQRYLVNRRRQDVRDQAKEMAEAAKPVLAAARRTPEYEEQVRRAAEREGRRTRRRCERERNYLLATHLDGMSSDDEIADQQQEQGLAMKALIETQAAEAFEDVNDDFCKIDLILMKFYAWRKTDMSSYQDAFVSLCLPKLLAPLVRHELLLWSPLLEEYTDIETMHWYQACMLYACQSNETVEQLKEDPDLNLVPSLIERIVLPKVNSLVAECWDPLSTTQTLRLVGFINRLTREFPLSSSNKQLKKLFESIMERMRLALENDVFIPIFPKQVQEAKGSFFQRQFCSGLKLFRNFLSWQGILADKPLRELAIGALLNRYLLMAMRVCTPNDAISKVSIIVNTLPTVWLLTNSDTLKNLEVFISYIKQTLDNCDATNPLLMQSCDKAKQILQRLHSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00553721;
90% Identity
iTF_00599572;
80% Identity
-