Dmea000149.1
Basic Information
- Insect
- Drosophila melanica
- Gene Symbol
- -
- Assembly
- GCA_004143765.1
- Location
- SCDT01002838.1:17562-24729[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.4e-12 1.4e-08 34.5 0.0 1 40 303 343 303 346 0.90 2 4 1.9e-14 7.7e-11 41.7 0.1 2 39 358 395 357 398 0.94 3 4 4.4e-18 1.8e-14 53.3 0.0 1 45 412 457 412 457 0.98 4 4 4.5e-20 1.8e-16 59.7 0.0 1 43 464 507 464 508 0.97
Sequence Information
- Coding Sequence
- atgaCTAGTTTAGGCATGGGCATGaacggCGGTCTGTTGGGCGTGCCCATGGGCTTCCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACATGTCGATCTATCGTGCAATCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCATCATCATGCCACTGGCGATGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGGTGATTGAGGCCAAGCACTTGGCgcatgtgcagcagcaacagcaacagcaacagcagcagcagcagcaacaacaacagcagcagcagcagcagcaacaacagcaacagcagcaacatgcacatcatcatcagcatatGCACGCTCAGCAATTGTTGGCGcaaagtcagcagcagcagcaacagcagcagcagcaacagcaacaccaacagcagcaacagcaacaggcagcgGTGCATGCAGCACAGCATGCAGCGCATGCCACGCATACGGAAATCGGTGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACAGCGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTGGCAGCGTTTGCGGCCCCGGCGccggtggtgttggtggtggtggcggcatTGGTGGTGGTAGTGGTAGTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCACCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGACGCTCTGCAGAACGCATTGGAGGCACTGCGTTCCGGACAAATATCGGCGAATAAAGCATCAAAAGCGTTCGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGCGAGGGTATCCGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCCGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGACGCAATGAACGAGGCATTGAACTCCGTGCGCGTCGGTCAAATGTCAATCAATCAGGCGGCCATACACTATAACCTGCCCTACAGTTCGCTTTACGGACGCTTCAAGCGTGGCAAGTACGATGTGGTGGCCAACACCAGTGGCGTCTCCCTGATCAACACATCGGGCAACACGACCGGCAGCATTGAAATTATCGAGCATAGTCAGGAGAATTCGttgcatatgttgcagcaacagttcCCGTACAGTCCGTCGCCGCATCCGCCGACGCCGCAGCATCACAATGCGCCGCAGCATCACAGTACGCCGCTGCATCATGGCACGCCGCAGCATCACAGTTCGCAGCAGGGGCCGCCGACGCCGCAGAATATGCAACAGCACGTGGTGCACATGCAGCAGTCGCCGCACCAggcgcaccaccagcagcagcagcagcacatgcAACAAGATGTGGTCACATCGAGCAGCCAGGTGGTGCatagccagcaacaacagcagcagcagcagcagcaacagcagcaacagcagcagcagcttcagcagaTCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQQQQQQQQQQQQQQQQQQQQQQQQQQQQHAHHHQHMHAQQLLAQSQQQQQQQQQQQQHQQQQQQQAAVHAAQHAAHATHTEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTAHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGGIGGGSGSAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLINTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHNAPQHHSTPLHHGTPQHHSSQQGPPTPQNMQQHVVHMQQSPHQAHHQQQQQHMQQDVVTSSSQVVHSQQQQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01356052; iTF_00506779; iTF_00550174;
- 90% Identity
- -
- 80% Identity
- -