Dmon000569.1
Basic Information
- Insect
- Drosophila monieri
- Gene Symbol
- -
- Assembly
- GCA_035047585.1
- Location
- JAWNPJ010000001.1:3733551-3737125[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-11 1.2e-08 34.6 0.0 1 40 268 308 268 311 0.90 2 4 5.8e-14 6.6e-11 41.8 0.1 2 39 323 360 322 363 0.94 3 4 1.2e-17 1.3e-14 53.7 0.0 1 45 377 422 377 422 0.98 4 4 1.4e-19 1.5e-16 59.9 0.0 1 43 429 472 429 473 0.97
Sequence Information
- Coding Sequence
- ATGATACCCGATACTCCCGCTCGAATACGATTACCGGacCCCACCGAACCGCTCGACATAGACAATCACCTGGCCCAGCAGATCCACCGGCTCGATCAGTCCCCCATGCACTCCATCTCGCACCACCACGGCGACGAGAGCAACTCCAACCTGGTGCACATCAAGAGCGAGGTGATCGAGGCCAAGCACCTGGCCGCTGCCCAGCAGCATGCCCTCAACCAGGCCCAGCAGCAACACGCCCATCAccaggcccagcagcagcaacagcaacagcaacagcagcagcagcaacaacagcagcagcagcatctccATGCCCAGCAGCTGCTGGCCCAGAGTCAGGCccagttgcagcagcaacagcagcagcaccaccagcaacagcaacaggcagcagcggcggcggcagcggcagctgcagcagcggccGAAGTGCACGGCCAGCATGGGGGACATGTGTCGCACGGCGATATGGGTGGCGCCACCGTCATGGAGATCGACCCGAGCCAGATAAAGCACGAGCCGGGCATGATCATAACGCCAGAGATTGTCAACATGATGTCCACGGGGCACATGGACATGTACAACTCGGACACGAGCGAGGACTCAATGATGATCGCCAACGGCTCGCCGCACGATCAAAAGGAGCCACACTACACGAACTTGGATCAGCAGCACGGTGGTCTGGGGGGCAGCGTGTGCGGGCCGGGGCCCGGCGGTGCTGGTGGCGGTGGGGGCatgggtggtggtgctggctctggctctggcgaGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACATTGTGGCAACGTGCTCATCGGCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCCTGGAACGAGGATGCTCTCCAGAATGCTTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTCGGCATCCCCTCCTCGACGCTCTACAAGATCGCCCGGCGGGAGGGCATCCGCCTGGCGGCTCCCTTCAATGCCGCCCCAACCACGTGGACGCCCGATGATCTGGAGCGCGCCTTGGAGGCGATACGGGCGGGCAATACATCGGTCCAGAAAGCCAGTGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATCGAGCTGTCGCGCTCGAACCCGACACCCTGGTCCGAGGATGCCATGAACGAGGCCCTTAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCCTACAGCTCGCTCTATGGGCGCTTCAAGCGCGGCAAGTACGACGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGCCAGGAGAATTCGtTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAGCACCACAGCACTCCCCAAGGACCACCGACGCCGCAGcacatgcagcagcagcagcagcacgtcGTCcacatgcaacagcaacagcagcagtcgcCCCACCCGGGACACCATCCGCAGCACATGCAACAGGATGTGGTGACATCGAGCAGCCAGGTGGTGCatagccagcagcagcagcagcagctccagcagatCTATCAGCACCACGGAACGCCGGAGCGAAGTTGA
- Protein Sequence
- MIPDTPARIRLPDPTEPLDIDNHLAQQIHRLDQSPMHSISHHHGDESNSNLVHIKSEVIEAKHLAAAQQHALNQAQQQHAHHQAQQQQQQQQQQQQQQQQQQHLHAQQLLAQSQAQLQQQQQQHHQQQQQAAAAAAAAAAAAAEVHGQHGGHVSHGDMGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGLGGSVCGPGPGGAGGGGGMGGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSTPQGPPTPQHMQQQQQHVVHMQQQQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00541683;
- 90% Identity
- -
- 80% Identity
- -