Sjav016047.1
Basic Information
- Insect
- Sphaerogastrella javana
- Gene Symbol
- -
- Assembly
- GCA_037040025.1
- Location
- JBANCZ010009683.1:1-3290[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.5e-12 6.8e-08 34.7 0.0 1 40 249 289 249 292 0.90 2 4 3.6e-14 3.8e-10 41.9 0.1 2 39 304 341 303 344 0.94 3 4 8.3e-18 8.6e-14 53.5 0.0 1 45 358 403 358 403 0.98 4 4 5.3e-20 5.5e-16 60.6 0.0 1 43 410 453 410 455 0.96
Sequence Information
- Coding Sequence
- CCCACCGAACCGCTCGATATAGACAATCATTTGGCACAGCAAATCCATCGGCTTGATCAATCTCCAATGCATTCGATAGCGCATCATCACACGACCGGAGACGAGAGCAACTCGAATCTGGCACAGCACATCAAAAGCGAAGTGATTGAGGCCAAGCACTTGGCGCATGTGCaggcgcaacagcagcagcagcagcagcagcaacaacaacagcagcagcagcagcagcagcaacaacagcaacagcagcaacaacaacaacagcagcagcagcagcagcaacaacaacagcagcagcagcagcagcaacatgcacaccatcatcagcaacagcagcagcagcatttgcacGCACAGCAACTGCTGGCgagtcaacaacagcagcaacaacaacaacatcaacagcagcagcagcagcaagcagcagcagtgcatGCAcagcatgcagcagcagcagcagcggccgcAGCTGCAGCGCATGGCTCGCATGGGGAAATCGGCGGTGCCACCGTCATGGAGATTGATCCCAGCCAAATAAAGCACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCCAGTGGACATATGGATATGTATAATTCGGATACGAGCGAGGACTCGATGATGATCGCCAATGGATCGCCGCACGATCAAAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTGGCAGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAGGCCTCTGCCATTTATGGTATACCATCAACGACCTTATGGCAGCGTGCACATCGTTTGGGTATCGAAACGCCCAAGAAGGAAGGCGGCACCAAGTCCTGGAATGAGGATGCATTGCAAAATGCCTTGGAGGCATTGCGTTCGGGTCAAATATCGGCGAATAAGGCATCAAAAGCATTCGGTATACCCTCATCGACACTCTACAAGATAGCGCGTCGGGAGGGTATACGTTTGGCGGCCCCATTCAATGCCGCACCAACCGCCTGGACACCGGAGGACTTGGAACGTGCTTTGGAGGCGATACGTGCGGGTAACACGTCTGTACAGAAAGCGAGTGCTGAATTTGGCATACCAACAGGAACGCTTTACGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCATTAAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATACACTATAACCTGCCCTACAGCTCGCTCTATGGACGCTTTAAGCGTGGCAAATACGATGTGGCAAATACAAGTGGCGTCTCGCTAATTAATACCTCGGGCAACACCACCGGCAGCATTGAGATCATCGAGCATAGTCAGGAGAATTcgTTGCatatgttgcagcaacagttcCCGTACAGTCCGTCGCCACATCCGCCGCAGACGCCGCAGCATCACAGTACACCGCAGCATCACAGCTCGCAGGGACCGCCGACGCCGCAGCACATACAACAGCATGTGGTGCACATGCAACAGTCGCCGCATCAGGcacaccatcaacaacagcaacaacacatgcagcagcaacaggatgTGGTTACATCGAGCAGTCAAGTGGTGCatagccaacagcagcagcagcaacagcagcagcagcttcagcagATCTATCAGCATCACGGAACGCCTGAGCGCAGTTGA
- Protein Sequence
- PTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTTGDESNSNLAQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHAHHHQQQQQQHLHAQQLLASQQQQQQQQHQQQQQQQAAAVHAQHAAAAAAAAAAAHGSHGEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTAWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGVSLINTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPQTPQHHSTPQHHSSQGPPTPQHIQQHVVHMQQSPHQAHHQQQQQHMQQQQDVVTSSSQVVHSQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00541683;
- 90% Identity
- -
- 80% Identity
- -