Dmal011462.1
Basic Information
- Insect
- Drosophila malerkotliana
- Gene Symbol
- Aef1
- Assembly
- GCA_018153235.1
- Location
- JAECXV010000067.1:1587596-1588566[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0051 27 4.8 0.1 21 48 176 203 172 207 0.85 2 4 2.3e-05 0.12 12.4 0.0 21 52 204 235 200 236 0.89 3 4 0.024 1.3e+02 2.6 0.1 21 48 232 259 228 263 0.86 4 4 7.2e-05 0.38 10.7 0.1 21 47 260 286 256 293 0.88
Sequence Information
- Coding Sequence
- ATGATGCATATCAAGAGCCTGCCCCACGCCCATGCCGCTGCCACGGCGATGAGCAGCAACTGTGACATCGTCATCGTGGCCTCCCAGCCGCAGACGACTATAGCGAATAACAACAACAACGATACGGTCACCCAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTGGACCTCCGTCCGCACCGCCGCCGCCCACGGAGCTGCCTCTGCCCTTCCAAATGCACCTAACCGGGATCTCGGCGGAGGCGCACAGCGCCGCCCAAGCAGCAGCCATGGCAGCCGCCCAAGCCGCAGCGGCACAGGCAGCGGCGGCCGAGCAGCAGCAGGCTCCGCCGCCGCCCCCGCACCTGGCGCACCTTCACAGTCCGACGATCCCCAGCGATCACTATTTGTCAAGCAACGGGCATGGCGAACATCCGGGCGAGGGTGCTCCGGGGAGCAATGGAAGTGCTGGGGGTGGCGGCGGTGCTCGGGAGCACGAGAAGCCCTTCCACTGCACCGTGTGCGATCGCCGATTCCGGCAGCTGAGCACTCTGACCAATCACGTGAAGATCCACACCGGCGAGAAGCCCTACAAGTGCAACGTTTGTGATAAGACCTTCCGTCAATCGTCGACTCTGACGAACCATCTGAAGATCCACACGGGCGAGAAGCCCTACAACTGCAACTACTGTCCCAAGCATTTCCGTCAGCTGAGCACCCTGGCCAATCACGTCAAGATCCACACGGGTGAGAAGCCCTTCGAGTGCGTGATCTGCAAGAAGCAGTTCCGCCAGTCCAGCACGCTCAACAATCACATAAAGATTCACGTCATGGACAAGGTCTACGTTCCTGTCAAGATCAAAACGGAAGAGGAGGAGGGGTGA
- Protein Sequence
- MMHIKSLPHAHAAATAMSSNCDIVIVASQPQTTIANNNNNDTVTQAXXXXXXXXXXXXXXXXXXXXXXXXXSGPPSAPPPPTELPLPFQMHLTGISAEAHSAAQAAAMAAAQAAAAQAAAAEQQQAPPPPPHLAHLHSPTIPSDHYLSSNGHGEHPGEGAPGSNGSAGGGGGAREHEKPFHCTVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNYCPKHFRQLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00539170; iTF_00916842; iTF_00916699; iTF_00916636; iTF_00477684; iTF_00477545; iTF_00488372; iTF_00488230; iTF_00580181; iTF_00580332; iTF_00546168; iTF_00546312; iTF_00550458; iTF_00550602; iTF_00490299; iTF_00490441; iTF_00504347; iTF_00504195; iTF_00566301; iTF_00566448; iTF_00474879; iTF_00474726; iTF_00603735; iTF_00611718; iTF_00611565; iTF_00603578; iTF_00481888; iTF_00481747; iTF_00615104; iTF_00615248;
- 90% Identity
- iTF_00580181;
- 80% Identity
- iTF_00539170;