Dsub005881.1
Basic Information
- Insect
- Drosophila subsilvestris
- Gene Symbol
- Aef1
- Assembly
- GCA_035043285.1
- Location
- JAWNNB010001571.1:1974052-1975112[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0057 55 4.1 0.1 21 46 197 222 192 224 0.87 2 4 1.6e-05 0.16 12.2 0.0 21 52 225 256 221 257 0.89 3 4 0.013 1.2e+02 3.0 0.1 21 48 253 280 251 284 0.86 4 4 5.7e-05 0.55 10.5 0.1 21 47 281 307 279 314 0.88
Sequence Information
- Coding Sequence
- ATGATGCATATCAAGAGTTTGCAACATGCTCATGCCCATGCTGCTGCCACGGCGATGAGCAGCAACTGTGACATTGTTATTGTGGCCTCTCAGCCGCAGACGACGattgccaacaacaacaatgataCGGTCACACAGGCCACTCATCCCGGTCATGTGGCAGCGGCggtccaacagcagcagcaggcgcagcagcaggcgcagcagcatcaccaacagcagcaacaggcgcagcagcagcagcagcaacaacaacagcagtccTCTGGACCCCCCTCAGCGCCACCAGCTCCAGCGGAACACGCCGCCTTACCCTTCCAAATGCATCTGAATGGAATTTCGGCCGAGGCGCATAGTGCCGCTCAGGCTGCAGCCATGGCGGCTGCTCAGGCCGCAGCAGCtcaggcagcggcggcggatCAACAGCAGCCACCGCCAGCACCTCCACCACATCTGGTCCACTTGGCCACGCACAGCCCGACCATGTCGAATGATCACTACTTGGCCAATGGCCATGGCGAGCACCAGGGCGAGGGGGCTGGCAGTAATGGAAACTCTagcggtggtggtggaggtggcgCGAGAGACCAGGAAAAGCCGTTCCACTGCACCGTGTGCGATCGACGCTTCCGGCAGCTGAGCACACTGACCAACCATGTCAAGATCCACACTGGCGAGAAGCCCTACAAATGCAACGTTTGTGATAAGACCTTCCGTCAATCGTCCACGCTGACGAACCATCTGAAGATCCATACGGGGGAAAAGCCCTACAACTGCAACTTCTGTCCCAAGCATTTCCGTCAGCTGAGCACTCTGGCGAATCATGTCAAGATCCACACGGGTGAAAAGCCGTTCGAGTGCGTCATATGCAAAAAGCAATTCCGGCAGTCCAGCACGCTCAACAACCACATAAAGATCCACGTCATGGACAAGGTCTACGTTCCTGTCAAGATCAaaacggaggaggaggaggggtgA
- Protein Sequence
- MMHIKSLQHAHAHAAATAMSSNCDIVIVASQPQTTIANNNNDTVTQATHPGHVAAAVQQQQQAQQQAQQHHQQQQQAQQQQQQQQQQSSGPPSAPPAPAEHAALPFQMHLNGISAEAHSAAQAAAMAAAQAAAAQAAAADQQQPPPAPPPHLVHLATHSPTMSNDHYLANGHGEHQGEGAGSNGNSSGGGGGGARDQEKPFHCTVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNFCPKHFRQLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00539316;
- 90% Identity
- iTF_00517948;
- 80% Identity
- iTF_00603578;