Basic Information

Gene Symbol
ftz-f1
Assembly
GCA_037075285.1
Location
JBAMCF010000084.1:1-12174[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2 2.2e+04 -11.1 19.7 82 156 67 162 4 183 0.43
2 3 2.4e-19 2.6e-15 57.0 0.4 1 76 350 425 350 456 0.74
3 3 1.6e-53 1.8e-49 169.6 1.4 157 359 555 750 536 752 0.90

Sequence Information

Coding Sequence
ATGTTATTAGAAATGGATCAGCAACAGGCGACCGTACAGTTTATATCGTCGCTGAATATATCGCCGTTCAGCAtgcagctggagcagcagcagcagccctcCAGTCCCGCCTTGGCCGCcggtggcaacaacaacaacaatgccagcggtagcaacaacaacagcggcggcggcaccagcggcagcaacaacaccagcagcagcaacaacaacaacaataacgacAATGATGCACATGCTCTAACCAAATTCGAGCATGAGTACAATGCCTATACGTTGCAATTGGCTGGGGGCGGTGGTGGGAGTGGCGGTGTCGGTGGCAACCAGCAACACCACAGCAGccaccaccagcaacagcagcagcagcagcaacaacagcagcaacatcagcagcagcagcaagaacactaccagcagcaacaacagaatATTGCCAACAATGCCAATCAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGACACCACCTCCTCGCACTCGCAGCAAagcggaggaggcggtggggGCGGCGGTGGCAACCTGCTCAATGGCAGCTCCGGCGGCAGTTCCGCCGGCGGTGGCTACATGCTCCTCCCCCAGGCGGCCAGTTCCAGTGGCAATAATAACAACCAGAATGCCGGCCACATGTCCTCCGGTTCCGTGGGCaacggcagcggcggcggtggcaacAATGGCGGATCGGGCGGGGGATCCGGTCCGGGAAATCCCATGGGCGGCACGAGCGCAACGCCGGGACACGGCGGCGAGGTGATCGACTTCAAGCACCTGTTCGAGGAGCTCTGCCCCGTGTGCGGCGACAAGGTGAGCGGCTACCACTACGGCCTGCTCACCTGCGAGTCCTGCAAGGGATTCTTCAAGCGCACCGTGCAGAACAAGAAGGTCTACACCTGCGTGGCGGAGCGCTCGTGCCACATCGACAAGACGCAGCGCAAGCGGTGTCCCTACTGCCGCTTCCAGAAGTGCCTCGAGGTCGGCATGAAGCTAGAGGctgTTCGAGCGGATCGGATGCGGGGTGGACGAAACAAATTCGGACCCATGTACAAACGGGATCGGGCGCGAAAGCTGCAGGTGATGCGGCAGCGGCAGTTGGCGCTGCAAGCGCTGCGCAACTCGATGGGTCCGGACATAAAGCCAACGCCGATCTCGCCGGGCTACCAGCAAGCATATCCAAATATGAACATTAAGCAGGAAATTCAAATACCTCAGGTATCCTCACTCACCCAATCTCCGGATTCGTCGCCCAGCCCCATAGCGATTGCGTTGGGACAGGTGAACGCGAGCACGGGCGGTGTGATAGCCACGCCCATGAACGCCGGCAACGGCGGCAGTGGGGGCGGAGGTCTCAACGGGCCCAGTTCCGTGGGCAATGGCAATAGtagcaacggcagcagcagcggcaacaacaacagcagcacgGGCAACGGAGCgtccggcggaggaggaggtggcaaCAATGcgggcggcggaggaggaggcaccAATTCCGTGGATGGCCTGCATCGCAACGGCGGCAATGGCAACAGCAGTTGCCACGAGGCTGGAATAGGATCTCTGCAAAACACGGCCGACTCGAAATTGTGcttCGATTCTGGCACACATCCATCGAGCACAGCTGACGCGCTAATCGAGCCATTGAGAGTCTCACCGATGATTCGTGAATTTGTGCAATCGATCGACGATCGGGAATGGCAGACGCAACTCTTTGCCCTGCTGCAGAAGCAAACCTACAACCAAGTGGAGGTGGATCTCTTCGAGCTGATGTGCAAAGTGCTCGACCAGAACTTATTCTCGCAAGTGGACTGGGCACGAAACACCGTCTTCTTCAAGGATCTGAAGGTCGATGACCAAATGAAGCTGCTGCAGCATTCCTGGTCGGACATGCTGGTTCTGGATCACCTGCATCATCGAATCCACAACGGCCTGCCCGATGAGACGCAACTGAACAATGGTCAGGTGTTTAATCTGATGAGCCTGGGATTGTTGGGTGTGCCACAGCTGGGCGACTACTTCAACGAGTTGCAGAATAAGCTGCAAGATCTGAAATTCGATATGGGCGACTATGTCTGCATGAAATTCCTAATCCTGTTGAATCCAAatgtACGGGGTATTGTCAACCGGAAGACCGTCTCCGAGGGACATGATAATGTGCAAGCAGCTCTGCTGGACTACACCCTCACCTGCTATCCGTCAGTCAAT
Protein Sequence
MLLEMDQQQATVQFISSLNISPFSMQLEQQQQPSSPALAAGGNNNNNASGSNNNSGGGTSGSNNTSSSNNNNNNDNDAHALTKFEHEYNAYTLQLAGGGGGSGGVGGNQQHHSSHHQQQQQQQQQQQQHQQQQQEHYQQQQQNIANNANQFNSSSYSYIYNFDSQYIFPTGYQDTTSSHSQQSGGGGGGGGGNLLNGSSGGSSAGGGYMLLPQAASSSGNNNNQNAGHMSSGSVGNGSGGGGNNGGSGGGSGPGNPMGGTSATPGHGGEVIDFKHLFEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPYCRFQKCLEVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRNSMGPDIKPTPISPGYQQAYPNMNIKQEIQIPQVSSLTQSPDSSPSPIAIALGQVNASTGGVIATPMNAGNGGSGGGGLNGPSSVGNGNSSNGSSSGNNNSSTGNGASGGGGGGNNAGGGGGGTNSVDGLHRNGGNGNSSCHEAGIGSLQNTADSKLCFDSGTHPSSTADALIEPLRVSPMIREFVQSIDDREWQTQLFALLQKQTYNQVEVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPNVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2