Djam006534.1
Basic Information
- Insect
- Drosophila jambulina
- Gene Symbol
- MBD2
- Assembly
- GCA_018152175.1
- Location
- JAECXH010000012.1:21404712-21406317[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-22 1.6e-18 66.0 0.0 1 74 8 94 8 97 0.94 2 2 2.6e-06 0.0087 15.6 0.0 27 76 191 251 175 252 0.93
Sequence Information
- Coding Sequence
- ATGCAGAACCCGAGCGTCACAATCGAGCGCAAACGCGTCGACTGCAGTGCCCTGCCGAAAGGATGGCAGCGCGAAGAGGTCCGCAAATCCGGCAGCAGCTCCAATAGCAACGCCAGCGCTACCAACACAACCACCGCCAGCAACAACAACAACAATAACAAGGTGGATGTTTTCTACTACAGTCCCACAGGAAAACGGGTCGAGAGCAAGCCGCAGTTGGCGCGCCAATTGGGCGGCGAGTCCTTTGACATCGCCAGCTTTGATTTCCAGTCCGGCAAGATGCAGCAGCAGCAGCAACCACACCACCAGCGGGCGCTGCCGTCGCCTTCCATTTCGCTGTACAGATGCAGCGCCATGCCGCTGCCGTTGACGGGCGGCGGTGGCAGCAGTGGCCACGGATCTGCGGCCAACGCCCTCAAGCGCAAGTTGGCCCGCTCGCAGCTGGGCAACCAGGCCAGTGTGGGAGCTGGCTCGGGATCAGCTCCAATTACAGCGGCGCCAGCAGCAGCAGCCGCCTCCTCCTCCTCGCCCACGGCAGCCAACCGCCAGCAGCAGCAGATTGAACTCAGCCGGGCCCTTCGCACAGACGTCTCCCTGGTGCCACCCATTCGACAGACTGCCTCGATCTTCAAGCAACCCGTAACGGCTATTCGAAACCACAGCCAGGACCCTGGGAAGGTGAAACCCGACGCCAAACATGGCACTCAGGAGAAACCCAAACAGTTGTTCTGGGAGAAACGACTGGAGCGACTGCGCGCATGCCACGACAATGGCGAGGAGCTCGATGACATCTCACTGCCCAAAACCATACGCACTGTTGGCCCCAACGTCAACGAACAGACCGTCCTTCAATCGGTGGCCACCGCTCTGCACATGCTCAGTGCTGGCGTGCACGGCCAGAGTTCGACAAAGGCTGACTTGACCAAGAATGCGATGGCATTCATGAATCCCGAACAGCCGCTTATGCATGCGGTCATTATCTCCGAGGACGACATACGGAAGCAGGAGGATCGGGTCGGTGTGGCGCGGCGGAAGCTGCAGGACGCACTTAAGACATGA
- Protein Sequence
- MQNPSVTIERKRVDCSALPKGWQREEVRKSGSSSNSNASATNTTTASNNNNNNKVDVFYYSPTGKRVESKPQLARQLGGESFDIASFDFQSGKMQQQQQPHHQRALPSPSISLYRCSAMPLPLTGGGGSSGHGSAANALKRKLARSQLGNQASVGAGSGSAPITAAPAAAAASSSSPTAANRQQQQIELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHSQDPGKVKPDAKHGTQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLSAGVHGQSSTKADLTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00480158;
- 90% Identity
- iTF_00490074;
- 80% Identity
- -