Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.8e-18 1.1e-14 53.9 0.0 1 43 55 98 55 100 0.95

2 3 2.9 6.6e+03 -3.0 0.2 7 18 182 192 180 192 0.82

3 3 0.25 5.6e+02 0.4 0.2 15 23 217 225 215 233 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.8e-18	1.1e-14	53.9	0.0	1	43	55	98	55	100	0.95
2	3	2.9	6.6e+03	-3.0	0.2	7	18	182	192	180	192	0.82
3	3	0.25	5.6e+02	0.4	0.2	15	23	217	225	215	233	0.81

Coding Sequence: ATGATGGAGAACTCTCATGCCTGGATGGGTGCCACCGGATCCACGCTGGCAGCAGATAGCTATCAATATCAATTGCAATCGATGTGGCAAAAATGCTGGAACACCAATCAGAATCTAATGCATCATATGCGTTTCCGTGAGCGAGGACCATTGAAATCCTGGCGTCCCGAAACGATGGCCGAGGCCATCTTTAGTGTCCTCAAGGAGGGACTCTCTCTGTCGCAGGCGGCACGCAAATATGATATACCATATCCCACCTTTGTTCTATATGCGAATCGTGTCCATAATATGCTTGGCCCATCCATCGATGGAGGTCCCGATTTGAGGCCCAAGGGCCGTGGCCGGCCACAACGCATTCTGCTTGGCATTTGGCCGGATGAGCATATCAAGGGGGTGATCAAGACTGTGGTATTCCGTGATGCCACCAAGGAATTGAAGGATGACACCACCCTGGGATTGGGTGGTCATATGCCGCCCTACGGTCGTCATTCGCCCGTATTTCCCTTGCAGGACATGAGCTTAAGCTATCCTGGAGCGGCTAGTGCCGCAGCTCTGGCTTGTTCCAATGGCATGGGCGGCGGCGGAGCTGGAGTTGGTGTGGGAGTGGGAGGCGGTCCGTCGGTTGTCGGCGGACCGGGGCCGGAACAGGGCCAAATGTCCCAGGAGACGGCAGCTGCTGTCGCCGCTGTGGCCCACAATATACGCCAGCAGATGCAGATGGCCGCTGCAGTGCAGCAGCAGCATCAGCATGGGGAAGCGGGACCGCCACCTGGGCTCTTCAATTTGCCACCACATCTGGCTGGCAGTGGCCCGCAGCAACAGTTTCACCAGCAGCTGGACAAATCCAAGACCAAAGGCAGTCCCATGCGAAGTGAAACGCCTCGCCTCCATTCACCTCTAACCGATTTGGGTCTCGAGATGAGCAGCTATAAAAGGGATTACTCTCCTTCGCGTCTATTTGCCGATGACCTGGCCGAGTTGGTGGAACCCATAACCACCACAAGCGGCGAGTAG
Protein Sequence: MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDATKELKDDTTLGLGGHMPPYGRHSPVFPLQDMSLSYPGAASAAALACSNGMGGGGAGVGVGVGGGPSVVGGPGPEQGQMSQETAAAVAAVAHNIRQQMQMAAAVQQQHQHGEAGPPPGLFNLPPHLAGSGPQQQFHQQLDKSKTKGSPMRSETPRLHSPLTDLGLEMSSYKRDYSPSRLFADDLAELVEPITTTSGE

Sequence clustering based on sequence similarity using MMseqs2