Dhyd010088.1
Basic Information
- Insect
- Drosophila hydei
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003285905.2
- Location
- NW:958954-982863[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-116 6e-112 373.3 27.9 1 299 30 321 30 322 0.98 2 2 0.024 3.1e+02 -0.1 3.5 212 241 343 371 324 395 0.53
Sequence Information
- Coding Sequence
- ATGGACAGTACTAACGCCACCGGTCGGCGGCGAAACAATATATGCGTTAATGCCGAAGATAACGCGCTGGATCAAATAACAAAAGAGgCCGAAGCACGTTTAGCAGCTCGACGTTTGGCCCGCGCTGAAGCTCGAGAGATACGTATGCGTGAACTAGAGCGGcagcaaaaagaattggaaCAAAGCGCAGATCGTGCGTTTGATATGCAAATCACAAGTGGAAATGTCATTAGCGACTCGCTCTCAGTACATTCTGCACGCCACGCCTATAGTGGTATTATTAACCTTTCACGTGCAACAGGTTCGCGACGCAGTAGCGAGGATTCATTAGAGGATGAAAGTCACAGTTTGCGTGATGTCAAACACGAACTTAAAgAAGTCGAAGAACGTTTTCGAAAAGCGATGATAACAAATGCTCAACTAGACAACGATCGCTCTTCTCAAACTTATGAAGTAAAACTACTTAAAGATAAAAGTGAAACAATGCAGGAATCTCTTGCTCAATTGCAACgagaatttaaaaacaaagttCGCGATTGTAGTGCCCTGAAACGCAATTTGGATCGCACAACTGTAGAATTAAACCTGGTGCAAGGTCAGCTAAGTGAGCGCGATAAACTAATTGAAGAACACggtcttgttattgttgcaattGAAAATAGTGATGGTAGTGATGCGAAGCGCGCTCTAGTCAGCGTTGAAAATGCCAATATTTTGGCAACTGTGCAGGGTTCTCTTGATgtaagaattaaaaaatttgcagAGCAAAAACAGCATCTTcttaatgaaatgcaaaagctTCGCGAACAGTTGGATGTTTTGAAAAGTGAATGTAGACCTGGCCGTGGCAGTTTATTTAGTGACTCTTTGGAGTACGATGATGACTATGACGTTCAAAgagaatcaaataaaatcatatccgattataaatataaactacaAAAAGCTGAACAGGAAATCGGTAGTCTCCAGGCAAACTTAGCCCGTTCAGAGACTCAAGTTATACGGTATAAAAGTACGGCTGAAGCTGCTGAAAAATCTGAGGCTGAACTGAAAGTGGAAAGACGTAAGCTGCAACGAGAGCACCGAGAGCTTTTGGAACGTTTGGAGGAAGCAGAAACTGCTAACAATCATCTACTTAAACGTCTTGACAAActaaaaaatgcaaagagtacaatattaaaagatttatga
- Protein Sequence
- MDSTNATGRRRNNICVNAEDNALDQITKEAEARLAARRLARAEAREIRMRELERQQKELEQSADRAFDMQITSGNVISDSLSVHSARHAYSGIINLSRATGSRRSSEDSLEDESHSLRDVKHELKEVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKSETMQESLAQLQREFKNKVRDCSALKRNLDRTTVELNLVQGQLSERDKLIEEHGLVIVAIENSDGSDAKRALVSVENANILATVQGSLDVRIKKFAEQKQHLLNEMQKLREQLDVLKSECRPGRGSLFSDSLEYDDDYDVQRESNKIISDYKYKLQKAEQEIGSLQANLARSETQVIRYKSTAEAAEKSEAELKVERRKLQREHRELLERLEEAETANNHLLKRLDKLKNAKSTILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502515;
- 90% Identity
- iTF_00549543; iTF_00476615; iTF_00502515;
- 80% Identity
- -