Deoh000293.1
Basic Information
- Insect
- Drosophila eohydei
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035045825.1
- Location
- JAWNOT010000007.1:1118035-1129008[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-116 1.6e-111 372.4 28.3 1 299 11 302 11 303 0.98 2 2 0.16 2.8e+03 -2.7 0.1 158 171 328 341 309 364 0.46
Sequence Information
- Coding Sequence
- ATGCTCAAATCGGTTCTGATGGAGGAATGGgCCGAAGCACGTTTAGCAGCTCGACGTTTGGCCCGCGCTGAAGCTCGAGAGATACGTATGCGTGAACTAGAGCGGCAGCAAAAAGAATTAGAACAAAACGCAGATCGTgcatttgatatgcaaatCACAAGTGGAAACGTCATTAGCGACTCGCTTTCAGTACATTCTGCACGCCATGCCTATAGTGGTATTATTAACCTGGCACGTGCAACAGGTTCGCGACGCAGTAGTGAGGATTCATTGGAGGATGAAAGTCACAGTTTGCGTGATATCAAACACGAACTTAAAGAAGTCGAAGAACGTTTTCGAAAAGCGATGATAACAAATGCTCAACTAGACAACGATCGCTCATCTCAAACTTATGAAGTAAAACTacttaaagataaaaatgaaacaatgCAGGAATCTCTTGCTCAATTGCAAAgagaatataaaaacaaagttcGCGATTGTAGTGCCCTGAAACGCAATTTGGATCGCACAACTGTAGAATTAAACCTGGTGCAAGGTCAACTAAGTGAGCGCGATAAACTAATTGAAGAACATggtcttgttattgttgcaattGAAAATAGTGATGGTAGTGATGCGAAGCGCGCTCTAGTTAGCGTTGAAAATGCCAATATTTTGGCAACTGTGCAGGGTTCTCTTGATgtaagaattaaaaaatttgcagAGCAAAAACAGCATCTTcttaatgaaatgcaaaagctTCGCGAACAGTTAGATGTTTTGAAAAGTGAATGTAGACCTGGCCGTGGCAGTTTATTTAGTGACTCTTTGGAGTACGATGATGACTATGACGTTCAAAGAGAATCAAATAAAGTCATATccgattataaatataaactacaAAAAGCTGAACAGGAAATCGGTAGTCTCCAGGCAAACTTAGCCCGTTCAGAGACTCAAGTTATACGGTATAAAAGTACGGCTGAAGCTGCTGAAAAATCTGAGGCTGAACTGAAAGTGGAAAGACGTAAGCTGCAACGAGAGATAATCGACAAAGTCATCAATGCTAAATCATACGTGATTAAACCAAAGCGGAATAATATAGGTGTATTCCCCCAATGCTGTGAAGACTATCGCACAGTAATAGACGACTTTACTAAGCTGGGCTTAGAGTTCCACTACTAG
- Protein Sequence
- MLKSVLMEEWAEARLAARRLARAEAREIRMRELERQQKELEQNADRAFDMQITSGNVISDSLSVHSARHAYSGIINLARATGSRRSSEDSLEDESHSLRDIKHELKEVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKNETMQESLAQLQREYKNKVRDCSALKRNLDRTTVELNLVQGQLSERDKLIEEHGLVIVAIENSDGSDAKRALVSVENANILATVQGSLDVRIKKFAEQKQHLLNEMQKLREQLDVLKSECRPGRGSLFSDSLEYDDDYDVQRESNKVISDYKYKLQKAEQEIGSLQANLARSETQVIRYKSTAEAAEKSEAELKVERRKLQREIIDKVINAKSYVIKPKRNNIGVFPQCCEDYRTVIDDFTKLGLEFHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00519914;
- 90% Identity
- iTF_00519914;
- 80% Identity
- -