Ddem001672.1
Basic Information
- Insect
- Drosophila demipolita
- Gene Symbol
- -
- Assembly
- GCA_035042405.1
- Location
- JAWNLI010000025.1:3377701-3382621[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00013 0.0088 16.4 1.3 1 23 403 425 403 425 0.98 2 11 3.5 2.5e+02 2.4 1.0 1 23 431 454 431 454 0.90 3 11 0.0091 0.64 10.5 2.0 5 23 787 805 784 805 0.92 4 11 0.044 3.1 8.4 1.4 1 23 811 834 811 834 0.98 5 11 6.7 4.7e+02 1.5 1.0 2 19 874 892 870 894 0.55 6 11 0.0002 0.014 15.7 0.7 1 23 914 937 914 937 0.97 7 11 0.011 0.74 10.3 0.4 1 23 1136 1159 1136 1159 0.92 8 11 0.00031 0.022 15.1 3.0 1 23 1173 1195 1173 1195 0.98 9 11 0.0014 0.1 13.1 4.0 2 23 1227 1251 1226 1251 0.90 10 11 0.039 2.8 8.5 0.2 1 23 1256 1278 1256 1278 0.97 11 11 0.0059 0.41 11.1 1.3 1 23 1284 1307 1284 1307 0.96
Sequence Information
- Coding Sequence
- ATGGCGCATAAACGTTTGAAAACAGCGGACATGGAAGTTAATTACAAATTCGCATGTCGCTGTTGCCTCAAATCGGAGGCGGAATTCTTCAAGCTGGACTCTCTCATCGACTGTGGCAACGTTGATGCCAATGACAATGACGATGATGCCTCGTCGCAAACAAAATTGCCCCTGCGGCGTTTACTGCTCTTCTGCATGCGCACCGAAAATCTGCCCGAGCTGCCGCAATACATTTGCGTGGAATGCCGAAAAAGTTTACAAATTGCCTACTATTTCATAAAGAACAGTTTGCGTGCCCATGAAATATTGTGTCGCAAACTGTGCCCGGGCAAGCTGCAAACCAAACCGCGTATCAACGGACAACACTTAGCCCTAAGGACCGAGGCAAAAGCTGGCGGAGCGATGCTGGAAACGCAAAGGGAGAAACCcctaaaatgcaaaacattcGGTGAGATTATACCTAATCGCTTGGAGCTCAAACATCATCTAGGATTGCATTCAGAGTCTCGACATTTGTGTAAATTGTGTAATTTCGTAACGCATAAGCATCGCCAGCTGCTGGAGCACTATCGCAAATCGCATGGCTTGACAACGGCCCAAATTGagcatcaattaaaaatacgtAGATCGCTACAGGCGGCTGCCAATTCATCAACAACCACAAAGGCGACAGCAGCTGCATCCACAGAAACGCCTGTTGCTGCGGATGATGATGGTCAGGTAAAAGTGTGCACAATAGAGGACATGGAGCTGCTGATACCCACTGTGTTGACACCCGAGGATTTCATGCATCCACGACTCGATGCGGATCAATTGCGTGACATTGAACAGCAATTGACGAGTAGCTCGATGGGCTTGCCCAACAGCACAGCTGCATTTAGGGAACCAGTTTCGGCAAATGTTACCGGAAACAGTGCCAATATGAGCATAGGTGCGGAGTTTCTGGTCTTGCCCGATGGCTCATTGCAGCAGGTTAATGCTGCTAGCGTTGTCTTCGAATATATTGATGATAGTACAAATGCAAAACCAGCAACATCCACATCGACCAATGTGAGTTTGGAGAGCCTGTTGAGTGACTCGAAAACAGATTTAACCTATGAACCAAATGCTATTGATCTGAGTCTTATGGTTGCCGATAATTTACTGCCACAGATAACAGTCAAGCCCAAGGTGCGACCAGCGCCATTGTCAACTGGTGCCCtgaaacacaaatgcaaactgTGCCCCAAAGCATTTCCGACGGTTGCACGCCTCAAATCTCACCAGCTAACGCATAGCCATTTACCTAAATTCTATTGCGATCAGTGCAAATATTATTCGCTGCGCAGCGCCGATCTCATCCAGCATTATACAAACGAGCATAATATGTGTGTCAGCGATGCGAAAGCTTGTCAAGTGGGAAAGTTACCAACGCTGACGGCAATGTTAACGGATCGCAATCGCAACTTTTCCTGCGATATGTGTCTGTTTGACACGCCCAGCGGAGGTCAGCTGCTCCAGCATTACAGTGATAAACATCTAATTGTACCCAGTGAGATACAACTGCGTCCTAGCTGGATCAGGGATCAGCAGGATGGATATGCGAAACGAAAAAGTGGCGACGGCAACCCACAACCAGACATTCCGCTGGGTATTAAATATCCAAACATGACGCAGTCTGAAacggcagcaacggcaacagcgacaacaacaaaaatggtgcaacagccgcaggcaataataacaacggCTGTGAATTCGACGGGTGGCAtaaatgttgttgtggatGCCAGTTCATTATTCTATGCAGCAACTGCTGACGAAAATGTAGCAGTAACAggtgccacagcaacaacaacaacgggcGGAATATCAACTGATTCAAGCACAATTGCAATATTTCCAGAGCAATGCctgtcaacaacaaaaacatcaacagcaaaggTTTCGACAACAAATCAACAGGAGGCAAGCAGTCAGGCagtgacagcaacaacaacaccaacaaatcCCAATACTAGCACATTTGGCGATATGCAGGAGTTTATAGATAATACAGATGTGGCTGCCATATGCACAATACCCGGCGACGATATGCCTGTGGATGGCGATGATATCGTGAtcgataataataacattagtCTGGATTTTGATGCTGAAAATCTATTTGAGGAATTTGAAGATGTCGAAGTTGGCGAGGAAGTTGACGATGAGGACGCTGACGAGGatgacgaggatgaggatgatgcAGACAATGATGATGAGAATGATAACAATAATGCGGCTGCCGATCAAAATATCTTGCTAACcagcgacgatgacgatgtggATGACTTTGACGACGAACAATCGAAGCATCTGCAGAAGCCCTACTGCATATTTTGCAACAGAAAGTTCACCAGTCAATACAAGTTCGAAAATCACATGTTTGTACATCGTGGTTTGGCCCCCTATCGCTGTGAGCTGTGCACCAATCTGTACAATATGAAACGCCTGCTCATACGACACTATAAGACAGTTCATAAAAAGATGCCCACGAGAGACATGGTGCAGGCCAAGGGCGACAAGGTTGCCGTGCCGTGTATGCATATCGAAAAGATTAATATAAAAGCGGGCAGAAatccTTTACTTATGTGCGCCAAATGTCCATTTGAATGTGAGCTAGATGTAGATATGCGCAAGCACTTAAATGCCCATCATGGCATCAACGATGGCGTTTCCATGCATGCCAACGAGGTGTTTATTATACGCAAACTGCCTTATGAGTGTCCACGCTGTGTTCGTTCATTTGCGGCAAAGCGAACGTTAACACGCCACTTGCAGCGCAGCCATTTAGTGGATACAATCATTGAGATGCAGGCGCTGCAATTGACACCAAGTTTGGAGGCAACGACAACCACCACTTTGCCGAACAATGCCAGCGATAGCAGTAGAGCCACAGCACATGCGGTTGACGAGTCGTCCAATAATTTCGATGGCGTTGGTAGCGATGAAAAATGCGATGATCAAGTGCTTGACAAGGATGCAGGATCAGAAATGGAAAATTCCTATACAGAAGTGAATATAAAAGACGCAATAAAAGATGTTACAAAgtcgacagcaacaacagacgTAAGAGATGGAACAACtgtagcaaaaacaacaaaaaaaacggcCATTACAAAAAAAGATGCTTCTGccatacaaacaaacagaacaGATTTTACATCAACAACACAACAGTCAGCAATCCCAGCACTTTTTCCAACGCCCACCTCCTTTGACTTTGATCTGGACTTCATtggcaagaacaacaacgatGATAGCTTCAATGTGGCATCTCTGCCTCCGCCTCTACTGCTAAATGGCAGCGATAAGTTGCTGACTGCCGCTCTGGAGCTGTCGCCCGTTAAGGATTTGCGTTCACGTCTGCCCCGTACCCCAATTTATGTGTGCAAGCAATGCAACCAAACATTCGACGAGCTGGCCAAGCTGTTGCAGCACGAGCTGCAGCAACATTCCAGTGGCACAATATCATCGCCACGCAGCAGCCATCAGCATCAGTGCAAGATCTGTAATGCCTCCTATCGCACTGTGACCCTGCTCAATTATCACATGAAGCGACATATGCCGGTCAAAGTGCCCTGCAAAGAGTTTCAGGTTAGCGCGGAGTTGGAGCAGCATGTACCGTCCGATCATTGTGGCAATAGTAGCCCACTCAAATGTGGCATCGATGGGTgtagaaaaacatttaattacaagCATCATTTAAAGCGACATCAGACCGCATCGCACACgcctgtaaaatatatttgtgaagTGTGCGGACGAGATTTGCTGACTAGCCTGTATTTAAGGAATCACATGTCTATGCACCGAGGCACCCACTCCTATAAGTGCCCCAAGTGCGTGCGTACCTATATGCGGCGTAATCCTTTCCGTCGACATGCGTTGCGGGAGCACAAATGGGAATTGACGGATGAGgaaattgataaaatatattgtgaaAATGATTCAACACCATCAACAATATTGTGCGATTTACGGTGA
- Protein Sequence
- MAHKRLKTADMEVNYKFACRCCLKSEAEFFKLDSLIDCGNVDANDNDDDASSQTKLPLRRLLLFCMRTENLPELPQYICVECRKSLQIAYYFIKNSLRAHEILCRKLCPGKLQTKPRINGQHLALRTEAKAGGAMLETQREKPLKCKTFGEIIPNRLELKHHLGLHSESRHLCKLCNFVTHKHRQLLEHYRKSHGLTTAQIEHQLKIRRSLQAAANSSTTTKATAAASTETPVAADDDGQVKVCTIEDMELLIPTVLTPEDFMHPRLDADQLRDIEQQLTSSSMGLPNSTAAFREPVSANVTGNSANMSIGAEFLVLPDGSLQQVNAASVVFEYIDDSTNAKPATSTSTNVSLESLLSDSKTDLTYEPNAIDLSLMVADNLLPQITVKPKVRPAPLSTGALKHKCKLCPKAFPTVARLKSHQLTHSHLPKFYCDQCKYYSLRSADLIQHYTNEHNMCVSDAKACQVGKLPTLTAMLTDRNRNFSCDMCLFDTPSGGQLLQHYSDKHLIVPSEIQLRPSWIRDQQDGYAKRKSGDGNPQPDIPLGIKYPNMTQSETAATATATTTKMVQQPQAIITTAVNSTGGINVVVDASSLFYAATADENVAVTGATATTTTGGISTDSSTIAIFPEQCLSTTKTSTAKVSTTNQQEASSQAVTATTTPTNPNTSTFGDMQEFIDNTDVAAICTIPGDDMPVDGDDIVIDNNNISLDFDAENLFEEFEDVEVGEEVDDEDADEDDEDEDDADNDDENDNNNAAADQNILLTSDDDDVDDFDDEQSKHLQKPYCIFCNRKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKKMPTRDMVQAKGDKVAVPCMHIEKINIKAGRNPLLMCAKCPFECELDVDMRKHLNAHHGINDGVSMHANEVFIIRKLPYECPRCVRSFAAKRTLTRHLQRSHLVDTIIEMQALQLTPSLEATTTTTLPNNASDSSRATAHAVDESSNNFDGVGSDEKCDDQVLDKDAGSEMENSYTEVNIKDAIKDVTKSTATTDVRDGTTVAKTTKKTAITKKDASAIQTNRTDFTSTTQQSAIPALFPTPTSFDFDLDFIGKNNNDDSFNVASLPPPLLLNGSDKLLTAALELSPVKDLRSRLPRTPIYVCKQCNQTFDELAKLLQHELQQHSSGTISSPRSSHQHQCKICNASYRTVTLLNYHMKRHMPVKVPCKEFQVSAELEQHVPSDHCGNSSPLKCGIDGCRKTFNYKHHLKRHQTASHTPVKYICEVCGRDLLTSLYLRNHMSMHRGTHSYKCPKCVRTYMRRNPFRRHALREHKWELTDEEIDKIYCENDSTPSTILCDLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00557462;
- 90% Identity
- iTF_00544048; iTF_00552629; iTF_00535634; iTF_00500601; iTF_00511583;
- 80% Identity
- -