Datr009565.3
Basic Information
- Insect
- Drosophila atripex
- Gene Symbol
- -
- Assembly
- GCA_035045925.1
- Location
- JAWNOP010000052.1:17805987-17815133[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.9e-10 9.6e-07 28.4 0.0 7 40 655 689 654 692 0.87 2 4 7.9e-14 1.1e-10 41.0 0.1 2 39 704 741 703 744 0.94 3 4 1.6e-17 2.2e-14 52.9 0.0 1 45 758 803 758 803 0.98 4 4 1.9e-19 2.6e-16 59.0 0.0 1 43 810 853 810 854 0.97
Sequence Information
- Coding Sequence
- ATGGGCCGGCCCGCCATTGTCTTTGATAGCAGGACCGTCCAGGGGCAGGAGGTCCAAAGCAGCAGGGGTACGGGTAGCATCCTGGGTTGCCCATTTGCCAACTGGGCTGGCCTCTTGCGCACCGCCGAGCAGCTAAAAATCAAAGGACTCTGCGAGACAGCGGAGAACGCGGATGACCTGAACGACGCGGCCACAGCGACGATAACTCTTTCGGAGAACATCCAGCAGGCGGTTGTGAGCAACATTGTGAATGCCACCATTGTTCCCGGGGCACCCTCGCCATCCCtggaacagcagcagcaacagcagcagcaggctcaGCTCCAggagcagcatcagcaacaacagcagcagcagcagcaacagcaggtgcatgcccagcagcaacaacaacaactgagCGGTGGCCTGTTGACGCAACACGGAGTGAGCAGCGGTAGCGCCGTCCCCCTAGCCGGACAACTATTGAGCTCTACGACCAGCAGTGGCAGCTCTGCCGGCGGACAGTCAGCGTCGGGATTGCAGCCAACGCCCCGCAAGTCGCGGCTAAAGCGTTCCAAGTCACCCGACTTGCAGCTACCCCCCGGCGGAAACAGTTCCGGACCGGGATCGAGTGGCTCGTCGCAACAGCAACCGCAGCCGGCCCACCACCACTCGCAAACGATTCTCATACAGGGCCAGAACCAGGCCTCCATCGTCAGTCTACAGCAGACGTCCGACGGCAACTACATACCAGTGGCCGGGAACGGTGACGAATCGGACACCGAGAACGATCACGACCACGAGCACGGCGGACACGGACATCAGCAGCACGGCGGACATCCGCACGGACAAGACCACGaacactcccactcccactcgcATTCGCATCCACACTCGCACGACCACGAGCACGAGAACAAGCCGAACAAGATCTGTAAGACGGAACAGTCGGTGGCCTCGCCGGCATCGAATTCATCCGGCGCCTCGAACAATGCTGCGGGCGTGAGCGGCGTCACATCCTCCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCgcgacggaaaagatacaaaaaatatgactaGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGTCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTCACGGAACATGTCGATCTGTCCTGCAATCCCAGCACGGACACACGCGATCTATCAAacCCCACCGAACCGCTCGACATAGACAATCACCTGGCCCAGCAGATCCACCGGCTCGATCAGTCCCCCATGCACTCCATCTCGCACCACCACGGCGACGAAAGCAACTCGAACCTGGTGCACATCAAGAGCGAGGTGATCGAGGCCAAGCACCTGGCCGCTGCCCAGCAGCATGCCCTCAACCAGGCCCAGCATCAACACGCCCATCACCaggcacagcagcagcagcagcagcagcaacagcagcagcaacaacagcaacagcaacagcagcacctCCATGCCCAGCAGCTGCTGGCCCAGAGTCAGgcccagctgcagcagcaacagcagcagcaccaccagcaacatcaacaggcagcagcggcggccgcggcggcagctgcagcagcggccGGAGTGCACGGCCAGCATGGGGGACATGTGTCGCACGGCGATATCGGTGGCGCCACCGTCATGGAGATTGACCCGAGCCAGATAAAGCATGAGCCGGGCATGATCATAACGCCAGAGATTGTCAACATGATGTCCACGGGGCACATGGACATGTACAACTCGGACACGAGCGAGGATTCAATGATGATCGCCAACGGCTCGCCGCACGATCAAAAGGAGCCGCACTACACGAACTTGGACCAGCAGCACGGTGGTCTGGGGGGCAGCGTGTGCGGGCCGGGGCCCGGCGGTGCTGGTGGCGGTGGGGGCatgggtggtggtgctggctctggctctggcgaGAAAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACATTGTGGCAACGTGCTCATCGGCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCCTGGAACGAGGATGCTCTCCAGAATGCTTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTCGGCATCCCCTCCTCGACGCTCTACAAGATCGCACGGCGGGAGGGCATCCGCCTGGCGGCTCCCTTCAATGCCGCCCCAACCACGTGGACGCCCGATGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGCAATACATCGGTCCAGAAAGCCAGTGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAAGGCATCGAGCTATCGCGCTCGAACCCGACACCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCCTACAGCTCGCTCTATGGACGCTTCAAGCGTGGCAAGTACGACGTGGTGGCAAATACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGCCAGGAGAATTCGtTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAGCACCACACCACTCCCCAAGGACCACCGACGCCGCAGcacatgcagcagcagcacgtgGTCCACATGCAGCAGCAGTCGCCCCATCCGGGACACCATCCGCAGCACATGCAACAGGATGTGGTGACATCGAGCAGCCAGGTGGTGcacagccagcagcagcagcagctccagcagatCTATCAGCACCACGGAACGCCGGAGCGAAGTTGA
- Protein Sequence
- MGRPAIVFDSRTVQGQEVQSSRGTGSILGCPFANWAGLLRTAEQLKIKGLCETAENADDLNDAATATITLSENIQQAVVSNIVNATIVPGAPSPSLEQQQQQQQQAQLQEQHQQQQQQQQQQQVHAQQQQQQLSGGLLTQHGVSSGSAVPLAGQLLSSTTSSGSSAGGQSASGLQPTPRKSRLKRSKSPDLQLPPGGNSSGPGSSGSSQQQPQPAHHHSQTILIQGQNQASIVSLQQTSDGNYIPVAGNGDESDTENDHDHEHGGHGHQQHGGHPHGQDHEHSHSHSHSHPHSHDHEHENKPNKICKTEQSVASPASNSSGASNNAAGVSGVTSSGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVSMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHGDESNSNLVHIKSEVIEAKHLAAAQQHALNQAQHQHAHHQAQQQQQQQQQQQQQQQQQQQHLHAQQLLAQSQAQLQQQQQQHHQQHQQAAAAAAAAAAAAAGVHGQHGGHVSHGDIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGLGGSVCGPGPGGAGGGGGMGGGAGSGSGEKALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHTTPQGPPTPQHMQQQHVVHMQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00614825; iTF_00477260; iTF_00545886; iTF_00550175;
- 80% Identity
- -