Dano003412.3
Basic Information
- Insect
- Drosophila anomalata
- Gene Symbol
- -
- Assembly
- GCA_035046425.1
- Location
- JAWNNY010000476.1:3962529-3971910[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.8e-10 1.1e-06 28.5 0.0 7 40 638 672 637 675 0.87 2 4 7.8e-14 1.2e-10 41.1 0.1 2 39 687 724 686 727 0.94 3 4 1.6e-17 2.5e-14 52.9 0.0 1 45 741 786 741 786 0.98 4 4 1.9e-19 2.9e-16 59.1 0.0 1 43 793 836 793 837 0.97
Sequence Information
- Coding Sequence
- ATGGGAATGGGTAGTATCCTGGGTTGCCCATTTGCCAACTGGGCTGGCCTCTTGCGCACCGCCGAGCAGCTGAAAATCAAAGGACTCTGCGAGACAGCCGAGAACGCCGATGACCTGAACGACGCGGCCACAGCGACGATAACTCTGTCGGAGAACATCCAGCAGGCGGTTGTGGGCAACATAGTGAATGCCACCATTGTTCCCGGGGCACCCTCGCCATCCCtcgaacagcagcagcagcaacagcaacagcagcagcagcagcaggctcaGCTCCaggagcagcatcagcagcagcaacagcagcaggtgcatgcccagcagcagcaacaacaacaactgagTGGCGGCCTGTTGACGCAACACGGAGTGAGCAGCGGTGGTGCCGTCCCCCTAGCCGGACAACTCCTGAGCTCCACGGCCAGCAGTGGCAGCTCTGCCGGCGGACAGTCAGCATCGGGCCTGCAGCCCACGCCCCGCAAGTCGCGGCTAAAGCGTTCCAAGTCACCCGACTTGCAGCTACCACCCGGCGGAAGCAGTTCCGGAGCGGGATCGAGCGGCTCGTCGCAACAGCAACCACAGCCGGCACACCACCACTCGCAAACGATTCTCATTCAGGGCCAGAACCAGGCCTCCATTGTCAGTCTACAGCAGACGTCCGACGGCAACTACATACCAGTGGGAGCAGCCGGGAACGGTGACGAATCGGACACCGAGAACGATCACGATCACGGACACCAGCAGCACGGCGGACATCCGCACGGACACGACCACGAACActcccacgcccacgcccactcccACTCGCATTCGCATCCACACTCGCACGACCACGACCACGAGCACGAGAACAAGCCGAACAAGATCTGTAAGACGGAACAGTCGGTGGCCTCGCCGGCATCGAATTCATCCGGCGGCGCCTCGAACAATGCTGCGGGCGTGAGCGGCGTCACATCCTCCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgacTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGTCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTCACGGAACATGTCGATCTGTCCTGCAATCCCAGTACGGACACACGCGATCTATCAAACCCCACCGAACCGCTCGATATAGACAATCACCTGGCCCAGCAGATCCACCGGCTCGATCAGTCCCCCATGCACTCCATCTCGCACCACCACGGCGACGAAAGCAACTCCAACCTGGTGCACATCAAGAGCGAGGTGATCGAGGCCAAGCACCTGGCCGCTGCCCAGCAGCATGCCCTCAACCAGGCCCAGCAGCAACACGCCCATCACcaggcccagcagcagcagcagcaacagcagcagcaacaacagcaacagcagcagcagcacctccATGCCCAGCAGCTGCTGGCCCAGAGTCAGGCccagttgcagcagcaacagcagcagcaccaccagcaacagcaacaggcagcagcggcggcagcagcggcagcagcagcagcggccgGAGTGCACGGCCAGCATGGGGGACATGTGTCGCACGGCGATATCGGTGGCGCCACCGTCATGGAGATCGACCCGAGCCAGATAAAGCACGAGCCGGGCATGATCATAACGCCAGAGATTGTCAACATGATGTCCACGGGGCACATGGACATGTACAACTCGGACACGAGCGAGGACTCAATGATGATCGCCAACGGCTCGCCGCACGATCAAAAGGAGCCGCACTACACGAACTTGGATCAGCAGCACGGTGGTCTGGGGGGCAGCGTGTGCGGGCCGGGGCCCGGCGGTGCTGGTGGCGGTGGGGGCatgggtggtggtgctggctctggctctggcgaGAAAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACATTGTGGCAACGTGCTCATCGGCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCCTGGAACGAGGATGCACTGCAGAATGCATTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCGTTCGGCATCCCATCCTCGACGCTCTACAAGATCGCCCGGCGGGAGGGCATCCGCCTGGCGGCTCCCTTCAATGCCGCCCCAACCACGTGGACGCCCGATGATCTGGAGCGCGCCTTGGAGGCGATACGGGCGGGCAATACATCGGTCCAGAAAGCCAGTGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATCGAGCTGTCCCGCTCGAACCCCACACCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCCTACAGCTCGCTCTATGGACGCTTCAAGCGCGGCAAGTACGACGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGCCAGGAGAATTCGtTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAGCACCACAGCACTCCCCAAGGACCACCGACGCCGCAGCacatgcagcagcagcacgtgGTCCacatgcaacaacagcagcagcagcagtcgccCCACCCGGGACACCATCCGCAGCACATGCAACAGGATGTGGTGACATCGAGCAGCCAGGTGGTGcacagccagcagcagcagcagctccagcagaTCTATCAGCACCACGGAACGCCGGAGCGTAGTTGA
- Protein Sequence
- MGMGSILGCPFANWAGLLRTAEQLKIKGLCETAENADDLNDAATATITLSENIQQAVVGNIVNATIVPGAPSPSLEQQQQQQQQQQQQQAQLQEQHQQQQQQQVHAQQQQQQQLSGGLLTQHGVSSGGAVPLAGQLLSSTASSGSSAGGQSASGLQPTPRKSRLKRSKSPDLQLPPGGSSSGAGSSGSSQQQPQPAHHHSQTILIQGQNQASIVSLQQTSDGNYIPVGAAGNGDESDTENDHDHGHQQHGGHPHGHDHEHSHAHAHSHSHSHPHSHDHDHEHENKPNKICKTEQSVASPASNSSGGASNNAAGVSGVTSSGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVSMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHGDESNSNLVHIKSEVIEAKHLAAAQQHALNQAQQQHAHHQAQQQQQQQQQQQQQQQQQHLHAQQLLAQSQAQLQQQQQQHHQQQQQAAAAAAAAAAAAAGVHGQHGGHVSHGDIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGLGGSVCGPGPGGAGGGGGMGGGAGSGSGEKALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSTPQGPPTPQHMQQQHVVHMQQQQQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00481464;
- 80% Identity
- -