Dmer017953.1
Basic Information
- Insect
- Drosophila merina
- Gene Symbol
- -
- Assembly
- GCA_035047645.1
- Location
- JAWNPH010000089.1:18709429-18717355[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.8e-10 1.2e-06 28.3 0.0 7 40 702 736 701 739 0.87 2 4 7.8e-14 1.3e-10 41.0 0.1 2 39 751 788 750 791 0.94 3 4 1.8e-17 3.1e-14 52.6 0.0 1 45 805 850 805 850 0.98 4 4 1.8e-19 3.2e-16 59.0 0.0 1 43 857 900 857 901 0.97
Sequence Information
- Coding Sequence
- ATGGAGAAGAAGGAGGAGGTCCTGGGTAGTACATCCTGGGTTGCCCATTTGCCAACTGGGCTTCCTGAACGGTGCCTTCTTCTTGCTCTTACCCAAAGCCTCCTTCCTGCTTCTACCCTGCGCTCCTCCTTTCTAGTCCTAGCCGGTGCCTCCTTCCTAGTCCTGTCCGGTGCTCCTCCTTTTTGCTCCCAGCCGATGCCTCCTTCTTACTCCCAAACGGGCCTCTTGCGCACCGCCGAGCAACTGAAAATCAAAGGACTCTGCGAGACGGCAGAGAACGCGGATGACCTGAACGACGCGGCCACAGCGACGATAACCGTATCGGAGAACATCCAGCAGACGGTCGTGGGTAGCCTTGTCAATGCCACCATTGTTCCCGGAGCACCATCACCATCCCtggaacagcagcagcaccaacagcagcagcagcagcaccagcaacaggcTCAGCTCCAagagcagcaacatcagcaggtGCACgcccaacagcagcaactcACTGGTGGCCTGTTGACCTCGCACGGAGTGAGCAGCAGTGGAGGTGGTGGCATACCCCTAGCTGGACAGCTACtgagcagcagtggcagctcTGCTACGTCCGGTTTGCAGCCGACGCTACGCAAGTCGCGGCTAAAGCGTTCCAAGTCACCGGACTTGCCCGGCAGTTCCGGAGCGGGATCGAGCAACTCatcccagcaacagcaaccgcAGCCGGCGCACCATCACTCACAGACTATTCTTATCCAGGGCCAGAATCAGGCATCCATTGTGAGCCTGCAGCAGACGGCCGACGGCAACTACATACCAGTGTCCGGGAACGGTGACGAGTCGGACACCGAGAACGAGCACGAGCACGGGCACGGCCACGGACACAGTGGACATCCGCACGGACACAGCGGACACAGTGGACATCCGCACGGACACGATCACGAACACAGCCACTCCCACAGCCATAGCCactcgcattcgcattcgcatccGCATTCGCACGACCACGAGCACGACCACGACCCGGAGCACGATCACGACGAGCACGAGAACAAGCCGAACAAGATCTGTAAGACGGAGCAGTCGGTGGCCTCGCCGGCATCCAATTCATCCGGCGCCTCGAACAATGCTGCGGGCGTGAGCGGCGGCGTCACATCCTCCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGTCCATGGGCTTCCTGGACTTCACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTCACGGAACACGTCGATCTGTCCTGCAACCCCAGCACGGACACACGCGATCTATCAAATCCCACCGAACCGCTCGATATTGACAATCATCTGGCCCAGCAGATCCACCGGCTCGATCAGTCCCCCATGCACTCCATCTCCCATCACCACACCGGCGACGAGAGCAACTCCAACCTGGTGCACATCAAGAGCGAGGTGATCGAGGCCAAGCACCTGGCTGCCGCCCAGCAGCACGCCTTGAACcaggcccagcagcagcacgcCCATCACcaggcccagcagcagcaacagcaacagcagcagcaacagcagcaacaacagcagcaacagcagcagcagcacctccATGCCCAGCAGCTGCAGGCTCagttgcagcaacaacagcagcagcaccaccagcaacagcaacaggcaGCGGCCGCGGCggctgcagcagctgcagcagcggcCGGGGTGCACGGCCAGCATGGGGGACATGTGTCACACGCCGACATCGGCGGCGCCACCGTCATGGAGATCGATCCGAGCCAGATCAAGCATGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCGGGGCATATGGacatgtacaacTCGGACACGAGCGAGGACTCGATGATGATCGCCAATGGGTCGCCGCACGACCAAAAGGAGCCGCACTACACGAACTTGGATCAGCAGCACGGTGGTCTGGGGGGCAGCGTTTGCGGGCCGGGGCCCGGTGGTGCTGGTGGCGGTGGGGGCAtgggtggtggtgctggctctggctctggcgaGAAAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACATTGTGGCAACGTGCTCATCGCCTCGGCATCGAAACGCCCAAGAAGGAGGGCGGAACGAAGTCCTGGAACGAGGATGCTTTGCAGAATGCTTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTCGGCATACCCTCCTCGACGCTCTACAAGATCGCCCGGCGGGAGGGCATTCGCCTGGCGGCTCCGTTCAATGCCGCCCCAACCACGTGGACGCCGGAGGATCTGGAGCGCGCCTTGGAGGCGATACGGGCGGGCAATACATCGGTCCAGAAAGCCAGTGCCGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGAGGGAGGGCATTGAGCTGAGCCGCTCAAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCCTACAGCTCGCTCTACGGACGCTTCAAGCGCGGCAAATACGATGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGCCAGGAGAACTCGtTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAGCACCACAGCACGCCCCAAGGACCACCGACGCCGCAgcacatgcaacagcagcatgTGGTCcacatgcaacagcaacaacagcagcaacagcagcagcagtcgccACATCAGGGACACCATCCGCAGCACATGCAGCAGGATGTGGTGACATCGAGCAGCCAGGTGGTGCatagccagcagcagcagcagctccagcagATCTACCAGCACCACGGAACGCCGGAGCGAAGTTGA
- Protein Sequence
- MEKKEEVLGSTSWVAHLPTGLPERCLLLALTQSLLPASTLRSSFLVLAGASFLVLSGAPPFCSQPMPPSYSQTGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQTVVGSLVNATIVPGAPSPSLEQQQHQQQQQQHQQQAQLQEQQHQQVHAQQQQLTGGLLTSHGVSSSGGGGIPLAGQLLSSSGSSATSGLQPTLRKSRLKRSKSPDLPGSSGAGSSNSSQQQQPQPAHHHSQTILIQGQNQASIVSLQQTADGNYIPVSGNGDESDTENEHEHGHGHGHSGHPHGHSGHSGHPHGHDHEHSHSHSHSHSHSHSHPHSHDHEHDHDPEHDHDEHENKPNKICKTEQSVASPASNSSGASNNAAGVSGGVTSSGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVSMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVHIKSEVIEAKHLAAAQQHALNQAQQQHAHHQAQQQQQQQQQQQQQQQQQQQQQHLHAQQLQAQLQQQQQQHHQQQQQAAAAAAAAAAAAAGVHGQHGGHVSHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGLGGSVCGPGPGGAGGGGGMGGGAGSGSGEKALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSTPQGPPTPQHMQQQHVVHMQQQQQQQQQQQSPHQGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00481464;
- 80% Identity
- -