Damb005716.1
Basic Information
- Insect
- Drosophila ambigua
- Gene Symbol
- sip1
- Assembly
- GCA_018150905.1
- Location
- JAECWS010000100.1:20821610-20824260[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-93 6.5e-89 297.9 13.1 4 275 413 679 410 679 0.98 2 2 0.16 1.2e+03 -1.4 0.0 157 198 691 729 684 734 0.61
Sequence Information
- Coding Sequence
- ATGTCGGACAACGAGTACGAACGCTTTGAGATCACCGACTACGATCTGGACAATGAGTTCAACACGAACAGACCGCGCGGGCGGCACAGCAAGCATCAGCAGATCTACGGCATTTGGGCGGACGACAGCGACGAGGAGAGCCCCGGCGACGGTGGCGGCCAGAAGCGTCACGGCCGCCAGGCAAAGGACTACACAATGCCCGTGAATTTCGTGGCCGGCGGCATTCAGCAGGCGGGCAAAAAGAAGAAAAAGCCGCTCAAGGGCGAAGAAAAAGCCGGCAAGGAGGAGGCAGGCGACGCCGAAGATGCCGAAAAGAGCGACGACTCGGGGCAGGACAATGGGCGCCCAGCCTTTGGGCAGAGCGATCCCAGTTCGAACAGCTCCGAGGAGGAGGTGGAGCGACCCGCAATGAGAGGCAGCCAAGCCAAGCCCACGTTGTTCAAGCATCAATCGCACATCGCTGGCACTCGGAATGTGGGCGCCTGGGAGCAGCACACGCGCGGCATTGGCGCCAAGCTGCTGCTGCAGATGGGCTACGAGCCGGGCAAGGGTCTGGGCAAGGATCTGCAGGGCATATCGCAGCCGGTGCAGGCGCACGTGCGCAAGGGACGCGGCGCCATTGGCGCCTATGGCCCCGAGACCGCCGCCAGCATTGGCGGCAAAGCGCAGGCCATCAAGGTGGACGAGGATGTGCGCGAGGCCAAGGAGTTCAAGGAGCAGATGAACAAGTGGCGCAAGGGCGGCCTGGCCGAGCCCCAGGAGAAGGCCGCCGGCAAGCGCTACTACTACAAATCCGTCGAGGAGGTGATCGCCAAGGGCAAGAAGTCCACGCATCTGCTCTCCGAGAAGCTGAGCAAGCAATTGGGCAATGTGCCCGTCATCGATATGACGGGGCCGGAGAAGCGCGTCCTCAGTGGCTACCATGCGCTCGCCCAAACCAAAATCACGCCCGAGGAGACGCTCTACGACGCGGAGGCGGGCGGCGCATCCGTGCCGGTCTTTGCCCTGCCCGAACTGACGCACAACCTGCAGCTGCTGGTGAGCCAGTGCGAGCAGCAGATCATTGCCATTGACAAATCGGAGCGCGAGTCCGAGAGCCAGCAGGCGGCGCTCCAGTGCGAGTACAAGAAGCTCGAGGAGATTGTCCAGCTGGAGCGGAACCACATCAGCACGCTCGAGGAGGTGCTCGAACGTGTGGAGCGGCTGAGCGAGGATCCCGAAATCACACTGCATGCCGCGGAGAAGCTGTTCCTGCAGCTGCTGGATGACTTTGCCGCCGAGTTCAAGGAATTCGGGCTGGCCGATCTGGCGGCGGGCGTCATTGCGCCGCTGGTGAAGCGCGAGCTGGTCACCTGGCAGCCCCTGGAGGAGCCCACACAGCCGCTGCAGCTGATCAAGAAGTGGCGCGGAATGCTGCAACGCGAGGAGCCCGCGGGCCAGCAGCCGCGCAATGTCTTCGATCCATATTCGTCGCTGATTTGGGCGGGCGTGATGCCCTCGTTCCGTGCGTGCGCTGCCGTGTGGCAGCCCAAGGAGCATCCGCCGATGGCCGCGCTGCTGGATGCCTGGGCGCCGCTGCTGCCCACATGGGTGCTGGACTCTGTGCTCGAGCAGCTGGTGCTGCCGCGGCTCGTCACGGGCGTCTACGATTGGGATCCGCTCACCGACACGGTGCCCATACACAGCTGGGTGCTGCCCTGGCACGCCATTCTGGGCAGCAAGCTGGAGGAGTCCGTCTACCCGCAGATACGCAGCAAATTGGGCGTGGCCCTGCAGGCGTGGTCGCCGCAAGATCGCTCCGCGCGGGCCATGCTAACGCCCTGGGCCAAGGCCTTTCCGGAGGAGGAAATGGTCGACTTTCTGCAGCACCACATCACGCCCAAGCTGCAGGGCGTGCTCTCGGAGTTCATCATCAATCCGCTGCACCAGGACCTGGAGCAATGGAACCAGGTGTGGGAGTGGCACGAGCTCATCCCGCCGATGCACATGGCCAAGCTGCTGGACAAGCACTTCTTTCCGCGCTGGATGCAGGTGCTGGTCATGTGGCTGAACCAGTCGCCGGACTATGCGGAAATCTCGCGCTGGTACACGGGCTGGAAGGGCATGCTGAATGAGCCACTGCTGCGGGAGCCCAGCGTCAAGGAGCATCTGCGTCGTGCCCTCGACATGATGCATCGCGCGAGCGACGCCCTGCTGCAGCCCACAGCAGCGCCGCCACCGCCCACACCGCCTGCACCGCCCTCGGTGGCGGGTCTGTTGCCGCCACTCATGATGATGGATGTGGCGCCGCCCACGCAGCTGGAGTTCAAGGAGTTGGTCTCGCAGAAGTGTGCGGAACTGGGCATCATTTTTGCCCCACTGCCGGGCCGAAGGGAAATGGGCAAGCAGATTTATCGCGTGGGCAAACTCTTTTGCTACATCGATCGCAATGTGTGCATGCTGAGCGACAGCTCATTTAGCAATTGGCAGCCGGTGGCCCTCAATCATCTGCTGGAACGCACACAGGCGGGTTTGTTCTAG
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNTNRPRGRHSKHQQIYGIWADDSDEESPGDGGGQKRHGRQAKDYTMPVNFVAGGIQQAGKKKKKPLKGEEKAGKEEAGDAEDAEKSDDSGQDNGRPAFGQSDPSSNSSEEEVERPAMRGSQAKPTLFKHQSHIAGTRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASIGGKAQAIKVDEDVREAKEFKEQMNKWRKGGLAEPQEKAAGKRYYYKSVEEVIAKGKKSTHLLSEKLSKQLGNVPVIDMTGPEKRVLSGYHALAQTKITPEETLYDAEAGGASVPVFALPELTHNLQLLVSQCEQQIIAIDKSERESESQQAALQCEYKKLEEIVQLERNHISTLEEVLERVERLSEDPEITLHAAEKLFLQLLDDFAAEFKEFGLADLAAGVIAPLVKRELVTWQPLEEPTQPLQLIKKWRGMLQREEPAGQQPRNVFDPYSSLIWAGVMPSFRACAAVWQPKEHPPMAALLDAWAPLLPTWVLDSVLEQLVLPRLVTGVYDWDPLTDTVPIHSWVLPWHAILGSKLEESVYPQIRSKLGVALQAWSPQDRSARAMLTPWAKAFPEEEMVDFLQHHITPKLQGVLSEFIINPLHQDLEQWNQVWEWHELIPPMHMAKLLDKHFFPRWMQVLVMWLNQSPDYAEISRWYTGWKGMLNEPLLREPSVKEHLRRALDMMHRASDALLQPTAAPPPPTPPAPPSVAGLLPPLMMMDVAPPTQLEFKELVSQKCAELGIIFAPLPGRREMGKQIYRVGKLFCYIDRNVCMLSDSSFSNWQPVALNHLLERTQAGLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00487285;
- 90% Identity
- iTF_00603334;
- 80% Identity
- -