Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:3486826-3488724[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.033 41 5.8 0.1 20 51 127 158 118 161 0.87

2 12 0.14 1.7e+02 3.8 0.1 20 48 184 211 172 216 0.86

3 12 0.0022 2.8 9.6 0.3 21 43 241 263 237 268 0.91

4 12 0.011 13 7.4 0.1 21 52 269 300 264 302 0.89

5 12 2.1 2.7e+03 0.0 0.0 23 44 299 320 295 329 0.86

6 12 0.0013 1.6 10.3 1.0 15 47 347 378 335 382 0.85

7 12 0.017 21 6.8 0.1 20 44 408 432 400 442 0.87

8 12 3.1 4e+03 -0.5 0.1 21 44 437 460 432 464 0.78

9 12 0.077 97 4.6 0.2 20 44 464 488 460 495 0.87

10 12 0.06 76 5.0 1.8 21 43 520 542 509 549 0.82

11 12 0.0065 8.2 8.1 0.0 21 44 576 599 568 607 0.87

12 12 0.36 4.6e+02 2.5 0.3 21 43 604 626 600 631 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.033	41	5.8	0.1	20	51	127	158	118	161	0.87
2	12	0.14	1.7e+02	3.8	0.1	20	48	184	211	172	216	0.86
3	12	0.0022	2.8	9.6	0.3	21	43	241	263	237	268	0.91
4	12	0.011	13	7.4	0.1	21	52	269	300	264	302	0.89
5	12	2.1	2.7e+03	0.0	0.0	23	44	299	320	295	329	0.86
6	12	0.0013	1.6	10.3	1.0	15	47	347	378	335	382	0.85
7	12	0.017	21	6.8	0.1	20	44	408	432	400	442	0.87
8	12	3.1	4e+03	-0.5	0.1	21	44	437	460	432	464	0.78
9	12	0.077	97	4.6	0.2	20	44	464	488	460	495	0.87
10	12	0.06	76	5.0	1.8	21	43	520	542	509	549	0.82
11	12	0.0065	8.2	8.1	0.0	21	44	576	599	568	607	0.87
12	12	0.36	4.6e+02	2.5	0.3	21	43	604	626	600	631	0.89

Sequence Information

Coding Sequence: ATGGAAGTTGCACATATCCTTCCACATGTCCATCATGTCAGCTGCGTACCGCACAACCAATTCGTTAAAATCCGTTATTACAGTCAGTTTCGTTTCAGGTGCCAACGAGCTTCCAAATCGAGAATTCCGAGGAAGAAGACATTCGAATGTCGTCTATGCGGTTCTAATTTCAAAGCTCAAGGACATTTAAAAAAGCACATGCTGAGTCACACCGGCGACAAGCTGCTCAGGTGCGTCGTTTGCAATTACGAATGTCGACGTCCCTCCCATTTACTGCAGCACATGTACAAACACACCGACGGGAAGTCGCTCAAGTGTGACTTCTGCGATTACGAATGCAAACGGCTGCAGCATTTGAAGCAGCACGTGTCCATCCACaacgacgagaagccgttcggttgtagcttttgcgattataaatcgCACGGAAACGAACTTTTAAAACGACACGTTATGCTAAGACACACCCGAAAGAAGTCGTTGAACTGCGGCGTCTGCGGTTACAAAAGTCGAGGCAAAAATGAAATGAGGCAACATAAGTACAAGCACACGGTCGAGAAGCCATTgcgttgtgacctttgcgattacgaATGCCGACAGGGCCTATCCTTGAGAGTGCACAAGTTGAAACACGCGGGCGAGTTGCCGTTTAGCTGCGACTTATGCGATTACAAATGCGGATTGGCCGGGCAACTGAAACAGCATaagttaatacacaccgacgagaagccttTCGCTTGcgatctctgcgattacaagtgccgacAGGCCGCCAACTTGAGACAGCACAGTTTAATACACagcggcgagaagccgttcgcttgcgacctttgcgattataaatgccgacagctccAACATTTGAAAGAGCACCTGTCAATCCACAGCGATGTGAAGCCGTTCGCttgcgacctttgcgattacaagtcgCAACGAAGCGAACTTTTGAAACGACACATATTAACGCACACCGAGGAGAAATCGTTCAGCTGTGGCCTCTGCGGTTACAAGTGCCGATTTAAAAGCGACCTGAAGCGACACAGGTACAAACACACGGGGGAAAAGCCGTTCTGCTGCGATCTCTGCGATTACCAGTGCCGACAGAGCAGGTCTTTGAAGCTGCACAAGTTGAAACACGCGGACGAGCTGCCGCTTAACTGCGATCTATGCGATTACAAGTGCGGACTGGTCAGACAgttgaagcagcacaagttaaaacacaccgatgagaagccgttcgcttgcgatctttgcgactaTAGGTGCCGACAGGTCGGGAacttgaagcagcacaagtCAACGCACatcggcgagaagccgttcgcttgtgatctttgcgattacaagtgcgaGCGACTCCAACATTTGAAACAGCATTTATTCACCCACACGAgtgagaagccgtttagttgtagtctttgtgacTATAAGTGTCAACGAAATGAATCTTTGAAGCGACACGTGTTGAAGCACGACCGGGAGAATTCGTTCAAGTGCCACTGCGGTTACGCGTGTCGATTTAAGAGCGATCTGAAGCGGCACAAGCACAAGCACGCGGTCGAGAAGCAGTTCTGCTGCGAGCTTTGCGATTACACGTGCCGACAGAGCAGGTCCTTGAAACTGCACAGGTTGAAGCACTCGGGCGAGTTGCCGTTTGGCTGCGATCTCTGCGATTACAGGTGCGGGCTAGCCAGGCAATTGAAAGTGCACGCTTTgaaacacaccgacgagaagcccttcgcttgcgatctttgcgattataagttcCGAAAGGCCGGTAACTTGAAGCGACACAAGTTAACGCACAGCGGCGAGAAACCGTTTGCGTGCGACCTTTGCGATTGCAAGTACCGAAAACGCCAAAGTTTGATACGGCATAGGTTAACGCACACTCAGTAG
Protein Sequence: MEVAHILPHVHHVSCVPHNQFVKIRYYSQFRFRCQRASKSRIPRKKTFECRLCGSNFKAQGHLKKHMLSHTGDKLLRCVVCNYECRRPSHLLQHMYKHTDGKSLKCDFCDYECKRLQHLKQHVSIHNDEKPFGCSFCDYKSHGNELLKRHVMLRHTRKKSLNCGVCGYKSRGKNEMRQHKYKHTVEKPLRCDLCDYECRQGLSLRVHKLKHAGELPFSCDLCDYKCGLAGQLKQHKLIHTDEKPFACDLCDYKCRQAANLRQHSLIHSGEKPFACDLCDYKCRQLQHLKEHLSIHSDVKPFACDLCDYKSQRSELLKRHILTHTEEKSFSCGLCGYKCRFKSDLKRHRYKHTGEKPFCCDLCDYQCRQSRSLKLHKLKHADELPLNCDLCDYKCGLVRQLKQHKLKHTDEKPFACDLCDYRCRQVGNLKQHKSTHIGEKPFACDLCDYKCERLQHLKQHLFTHTSEKPFSCSLCDYKCQRNESLKRHVLKHDRENSFKCHCGYACRFKSDLKRHKHKHAVEKQFCCELCDYTCRQSRSLKLHRLKHSGELPFGCDLCDYRCGLARQLKVHALKHTDEKPFACDLCDYKFRKAGNLKRHKLTHSGEKPFACDLCDCKYRKRQSLIRHRLTHTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465325;
90% Identity: iTF_00465325;
80% Identity: iTF_00466741;