Dhop036674.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:76023834-76025687[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00016 0.017 17.0 2.0 1 23 36 58 36 58 0.98 2 21 0.00096 0.11 14.5 3.8 2 23 65 86 64 86 0.96 3 21 0.0091 1 11.5 5.6 1 23 92 115 92 115 0.94 4 21 0.17 19 7.4 0.6 3 23 123 144 121 144 0.94 5 21 0.45 50 6.1 2.6 3 23 148 168 147 168 0.96 6 21 0.2 22 7.2 1.7 2 23 175 196 174 196 0.96 7 21 0.037 4.1 9.5 2.0 1 23 202 224 202 224 0.97 8 21 0.00068 0.076 15.0 1.0 1 23 230 252 230 252 0.95 9 21 0.74 82 5.4 1.4 1 17 258 274 258 275 0.93 10 21 0.0006 0.066 15.2 1.3 1 23 286 308 286 308 0.98 11 21 0.0013 0.15 14.1 5.7 1 23 314 336 314 336 0.97 12 21 0.12 13 7.9 7.2 1 23 342 364 342 364 0.97 13 21 1 1.1e+02 5.0 2.3 2 23 371 392 370 392 0.95 14 21 0.0018 0.2 13.7 2.6 1 23 398 420 398 420 0.97 15 21 0.011 1.2 11.2 5.0 1 23 426 448 426 448 0.97 16 21 0.00029 0.032 16.2 4.5 1 23 454 476 454 476 0.98 17 21 0.48 53 6.0 8.8 5 23 485 503 482 503 0.95 18 21 0.013 1.5 10.9 7.1 1 23 509 531 509 531 0.97 19 21 0.043 4.7 9.3 1.1 1 23 537 559 537 559 0.97 20 21 9e-06 0.00099 20.9 1.2 1 23 565 587 565 587 0.97 21 21 0.0048 0.53 12.3 3.3 1 23 593 615 593 615 0.97
Sequence Information
- Coding Sequence
- ATGTCAGCTGCGCACTGCAACCAATTCGTTAAAATCCGTTATTACAGTCAATTTTGTTTCAGGTGCCAACGAGCCTCCAAATCGAGAATTCTGACGAAGAAGACATTCGAATGTCGTCTATGTGGTTCTAATTTCAAAGCTCAAGGACATTTAAAAAAGCACATGCTGAGTCACACAAACGACAAGCTGTTGAGGTGCGTCGTTTGCAATTACGAGTGCCGACGTCCCTCCCACTTACTGCAGCACATGTAcaaacacaccgacgagaagtcGTTCAAGTGTGACttctgcgattacaaatgcaaaCGGCTCCAGCATTTGAAGCAGCACGTCGTGTCAATCCATaacgacgagaaaccgttcggttgtagcttttgcgattataaatcgTACGGAAATGAACTTTTGAAACGACACGTTATGCTGAGGCACACCCGGAACTGTGGCACCTGCGATTACAAAACTCGATACAAAAATGAGATGAGGCAACATAAGTACAAgcacacgggcgagaagccgttacgttgtgacctttgcgattacgaATGCCGACAGGGCCTATCTTTGAGAGTGCACAAGTTGAAACACGCGGGCGAGTTGCCGTTTACCTGCGACTTATGCGACTACAAATGTGGATTGGCCAGGCAactgaaacagcacaagttaatacacaccgacgagaagcctttcgcttgcgatctttgcgattacaagtgccgacAGGCCGCCAACTTGAGACAGCACAGtttaatacacaccggcgagaagccgttcgctTGCGaactttgtgattataaatgccgacagctccaACATTTGAAAGAGCGCCTGTTAATCCACAGCGACGTGAAGCCGTTCAGCTGTAACCTCTGCGATTACAAGTCCCAACGAAGCGAACTCTTGAAGCGACATGTATTAACGCACACCGAGGAGAAATCGTTCAGCTGTGGCCTCTGCGGTTACAAGTGTCGATTTAAAAGCGACTTGAAGCGACACAGGTACAAACACACGGGGGAAAAGCCGTTCTgctgtgatctctgcgattaccAATGCCGACAGAGCAGGTCTTTGAAGCTGCACAAGTTGAAACACGCGGACGAGCTGCCGCTTAGCTGCGAACTATGCGATTACAAGTGCGGACTGGTCAGACAGttgaagcagcacaagttaaagcacaccgatgAGAAGCCATTCGCGTGCGACCTTTGCGACTATAAGTGCCGACAGGTCGGGAACTTGAAGCAGCACAAGTCGACgcacacgggcgagaagccgttcgcttgtgatctttgcgattacaagtgtgAGCGACTCCAACATTTGAAACAGCATTTGTTCACCcacacgggcgagaagccgtttagttgtagtctttgtgactacAGGTGTCAACGAAATGAGTCTTTGAAGCGACACATGTTGAAGCACGACCGGGAGAATTCGTTCAAGTGCCACTGCGGTTACGTGTGTCGATTCAAAAGCGACCTGAAGCGGCACAAGCACAAACACGCGGTCGAGAAGCAGTTTTGCTGCGAGCTTTGCGATTACACGTGCCGACAGAGCAGGTCCTTGAAACTGCACAGGTTGAAGCACTCGGGCGAGTTGCCGTTCAGCTGTGACCTCTGCGATTACAGGTGCGGACTAGCCAGACAGTTGAAAGTGCACGCGTTGAAACACACTGACGAGAAGCCCTTTgcttgcgatctttgcgattataagttcCGAAAGGCCGGCAACTTGAAGCGACACAAGTTGACGCACAGCGGCGAGAGACCGTTTGcgtgcgatctttgcgattgcAAATACCGAAAGCGCCAGAGTTTGATACAGCATAGGTTAACGCACACTCAGTAG
- Protein Sequence
- MSAAHCNQFVKIRYYSQFCFRCQRASKSRILTKKTFECRLCGSNFKAQGHLKKHMLSHTNDKLLRCVVCNYECRRPSHLLQHMYKHTDEKSFKCDFCDYKCKRLQHLKQHVVSIHNDEKPFGCSFCDYKSYGNELLKRHVMLRHTRNCGTCDYKTRYKNEMRQHKYKHTGEKPLRCDLCDYECRQGLSLRVHKLKHAGELPFTCDLCDYKCGLARQLKQHKLIHTDEKPFACDLCDYKCRQAANLRQHSLIHTGEKPFACELCDYKCRQLQHLKERLLIHSDVKPFSCNLCDYKSQRSELLKRHVLTHTEEKSFSCGLCGYKCRFKSDLKRHRYKHTGEKPFCCDLCDYQCRQSRSLKLHKLKHADELPLSCELCDYKCGLVRQLKQHKLKHTDEKPFACDLCDYKCRQVGNLKQHKSTHTGEKPFACDLCDYKCERLQHLKQHLFTHTGEKPFSCSLCDYRCQRNESLKRHMLKHDRENSFKCHCGYVCRFKSDLKRHKHKHAVEKQFCCELCDYTCRQSRSLKLHRLKHSGELPFSCDLCDYRCGLARQLKVHALKHTDEKPFACDLCDYKFRKAGNLKRHKLTHSGERPFACDLCDCKYRKRQSLIQHRLTHTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466741; iTF_00467117;
- 90% Identity
- iTF_00466741; iTF_00467117;
- 80% Identity
- -