Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72469039-72485959[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.064 88 4.8 0.3 14 45 13 43 9 51 0.80

2 20 0.29 4e+02 2.7 0.0 21 48 77 104 73 108 0.87

3 20 0.03 42 5.9 0.5 21 45 105 129 101 137 0.84

4 20 0.11 1.5e+02 4.1 0.1 21 48 133 159 131 164 0.87

5 20 0.028 39 6.0 0.1 21 45 161 185 157 191 0.89

6 20 0.026 36 6.1 2.0 14 45 260 290 248 298 0.76

7 20 0.011 15 7.3 0.2 20 48 323 351 315 357 0.84

8 20 0.43 6e+02 2.2 0.0 21 46 380 404 368 408 0.89

9 20 0.005 6.9 8.4 0.0 21 45 408 432 404 439 0.90

10 20 2.3 3.3e+03 -0.2 0.1 21 45 513 537 496 542 0.74

11 20 0.0092 13 7.5 0.1 22 47 571 596 567 602 0.84

12 20 0.45 6.3e+02 2.1 0.1 21 48 598 625 595 629 0.86

13 20 0.25 3.4e+02 2.9 0.0 21 46 626 650 621 657 0.84

14 20 0.37 5.1e+02 2.4 0.0 21 44 702 725 699 730 0.88

15 20 0.41 5.7e+02 2.3 0.1 21 52 874 905 871 906 0.90

16 20 0.0055 7.7 8.2 0.7 21 45 902 926 885 935 0.81

17 20 0.11 1.5e+02 4.1 0.0 17 45 926 954 925 961 0.86

18 20 0.2 2.8e+02 3.2 0.1 18 44 955 981 953 986 0.87

19 20 3.5 4.8e+03 -0.7 0.0 21 45 986 1010 982 1017 0.87

20 20 2.1 3e+03 -0.0 0.4 27 44 1020 1037 1011 1040 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.064	88	4.8	0.3	14	45	13	43	9	51	0.80
2	20	0.29	4e+02	2.7	0.0	21	48	77	104	73	108	0.87
3	20	0.03	42	5.9	0.5	21	45	105	129	101	137	0.84
4	20	0.11	1.5e+02	4.1	0.1	21	48	133	159	131	164	0.87
5	20	0.028	39	6.0	0.1	21	45	161	185	157	191	0.89
6	20	0.026	36	6.1	2.0	14	45	260	290	248	298	0.76
7	20	0.011	15	7.3	0.2	20	48	323	351	315	357	0.84
8	20	0.43	6e+02	2.2	0.0	21	46	380	404	368	408	0.89
9	20	0.005	6.9	8.4	0.0	21	45	408	432	404	439	0.90
10	20	2.3	3.3e+03	-0.2	0.1	21	45	513	537	496	542	0.74
11	20	0.0092	13	7.5	0.1	22	47	571	596	567	602	0.84
12	20	0.45	6.3e+02	2.1	0.1	21	48	598	625	595	629	0.86
13	20	0.25	3.4e+02	2.9	0.0	21	46	626	650	621	657	0.84
14	20	0.37	5.1e+02	2.4	0.0	21	44	702	725	699	730	0.88
15	20	0.41	5.7e+02	2.3	0.1	21	52	874	905	871	906	0.90
16	20	0.0055	7.7	8.2	0.7	21	45	902	926	885	935	0.81
17	20	0.11	1.5e+02	4.1	0.0	17	45	926	954	925	961	0.86
18	20	0.2	2.8e+02	3.2	0.1	18	44	955	981	953	986	0.87
19	20	3.5	4.8e+03	-0.7	0.0	21	45	986	1010	982	1017	0.87
20	20	2.1	3e+03	-0.0	0.4	27	44	1020	1037	1011	1040	0.89

Sequence Information

Coding Sequence: ATGACCATTCAAGTGCAAGCtctATCCAAGCCGACCAAATCCAAATCTAGAAAACCGGGCGAAAGGGAATTCGCATGCCGCGTATGCGGCGCCAAATTCCAATCCCGCAAGCTTACGCGTCAGCACGTGCTGAAGTCCCACACCAGCGGCAAGCTGTTCAGCTGTAACCGTTGCGAGCACAAATTTCGACAACTCGTAAACCTAGAAACGCACGTGTTgacacacaccggcgagaagccgttcggttgcGACTATTGCAATTTTAGATGCCGACGGTCGGGAGCGCTGAAGCTGCACCTGTcaatacacaccgacgagaagccgttcgctTGTGATGTTTGCGAATATAAATGCAGACAACCCTCGCAGTTAAGacagcacaagttaatacaCACCAATGAGAAACCACTCGCCTGCGACCTTTGCGACTATAAATGCCGACTGCTCgagaatttgaaacagcacttgttgaaacacaccggcgagaagccctTCAGTTGTAGcgtttgcgattacaaatgtcggcAGCCCGGAAGTTTAAAGAAGCATTTGctaatacacaccgacgagaaacacTACAGGTGCTACGTTTGCAGTTACGAATGCAACGAGGTCGCAGATTTGAAGGTGCACTTTTTAATGCACGACGAGAAGCCGTACAAGTGCGAACGTTGCGAATTTGCGGCTGCAACGCCCGAGCTCCTAAAAGGGCATATACGAGTGCACGTCGATGAAAAATCGCACAAGCGCAAGCGACTACAAAAATCCAAACCGCCCAAATCTAAATCTAGAAAACCAGCCGAAAGAGAATTCGCATGCCGCATATGCGGTGCCAAATTCCAATCCCGCAAGCTTACGCGTCAGCACGTGCTGAAGTCCCACACCAGCGGCAAGCTGTTCAGCTGTAATCGTTGCGAGCGAAAATTTCGGCAACTCGTAAACCTAGAAACGCACGTGTcgatacacaccggcgagaagccgttcgctTGCGACTACTGCAATTTTAGGTGTCGACAGCCGGGAGCGCTGAAGCGCCACttgttaatacacaccggcgagaaaccgttcgccTGCGATCGCTGCGAATATAAATGCAGAGAACCCTCAAAGTtaaaacagcacaagttaatacacaccgacgagaaaccatACGCCTGCGATCTTTGCGACTACAAATGCCGACTactcggaaatttgaaagagcACTTATTGAAACACACCGGCGAGCAGCCGTTCAGTTGTGGcgtttgcgattacaaatgtcgccAGCCCGGAAGCTTAAAAAAGCATTTGctaatacacaccgacgagaaacacTACAGGTGCTACGTTTGCAGTTACGAATGCAACGAGGTCGCAGATCTAAAGGTGCACTTTTTAACTCACGATGAGAAGCCGTACAAGTGCGAACGTTGCGAATTTGCGGCTGCAACGCCCGAGCTCCTAAAAGGGCATATACGAGTGCACGTCGATGAGAAATCGTACAAGCGCAAGCGACTACAAAAATTCCACCCGACGACCGAACGTAAATTTCTGGACGAAAAAGGATTCGCCTGCCGCATATGCGGCTCTAAATTCAAAAAGCGTAAACTCATGCGTCAACACGTCCTGGCGTCGCACACCAGCGGCAAGATGTTCAGCTGTAACCTGTGCGAACATAAAACCGTACATCGCGGAAACTTCGAGGCACACATGTTAACACACACCGGCGataaaccgttcagttgtgattactgcgattacaaatgtcggcAGTCGTCAGCTTTGAAGCGGCACATGCttatacacaccggcgagaaaccattcagttgtgatcacTGCCATTATAAATGCCGGGATCGCGGAGCTTTGACGCGCCACATGTCGATACActccgacgagaaaccgttcagctgcgatctctgcgattataaaggCCGTGAGCGCAGAGGTTTGTCGCGGCATAAGTTAACGCATATCTTAATACCAGAGAGTGGAAAATTACCCGGCGGTAAAAATGAGCAACTTTtgacgcacaccggcgagaagcttTTCAAGTGCGACCATTGCGAACACACGACCAAACTATTCGGATCGTTGAAGAGGCACCTGCTGGTGCATACCGACGAGAGGCCGTTCAAATGTAAGCTGTGTGACTACGCGGCCAGAAGATCGGAACATTTAAAATCACATGTGCTGACGCACACCGACGATGCGCCGTTTGAATGTACGCTTTGCAGTTACAAGGGCAAAACCTTGAAGAGATTAAGGTTGCACATgtGCCGGCACAAGGATGCCTTGACGCGGCACACGTTGATACATACCGGCGAGATGCCGTTCAAGTGTgaactttgcgattataagGGCCGGTATCCGGGAAGGTTTAAAGAGCACGTCTTGACGCACATCGCCGAAAGACGCTACAAGTGCACTGTATGCAATTACTCGGCTAAGTTTCCGAGGATTCTCAACAAATCCAGCGAGGTTTCAACCAacgacgccgccgccgccgtcgcCGTCCAATCGAGCTCTGAAAATCAACCGCAGGAGCCCAAGAGGCAGTACAGATACTCCTGCAAGTTCTGCAATTACGCGACCAATTACTCGGGGCATTTAAAATACCACGTCTAcacgcacaccggcgagaaaccctACGTCTGCTTGGTTTGCGACCGCAGATTCAACCAGCCGTACAATTTAGAGCAGCACCAGCGCACTCACACCGGCGCGAAACCGTTTCAGTGCGAGATATGCGGGGCCAGCTTCCGCCAGGCCCACCACGTGAGAGATCACATGTCGAAGCACACCAACGAAACGCCCTACGTGTGCGAGACTTGCGGGGCGAAATTCAAAAGGGCCGAGTACTTACAGCGCCACATGCCCCGgcacaccggcgaaaagccCTTCGAGTGCTCCGTTTGCTCCGCGAAATTCGCGCGGAATTCGTCCCTGCAGCAGCACTTGTTGAGTCACAGCGACGAGAGGCCCTTTCAATGTATGCTTTGCGATCGGAGATTTAAGTCTCAGAAGACTTTGAAGTGGCACGTCGAGTCGCACACGGGGATGAAACGTTACAAGTGTGACTGGTGCATTTGTAAGTTTCGCTTGAAGTACCAACTGCGGCGCCACCTGGTTGCTCACGGCGAAGGTGAAGGGCGTTTGAAGTGCTTCGACTGCGCTTTTGGACTTGACAGCGCAACATAA
Protein Sequence: MTIQVQALSKPTKSKSRKPGEREFACRVCGAKFQSRKLTRQHVLKSHTSGKLFSCNRCEHKFRQLVNLETHVLTHTGEKPFGCDYCNFRCRRSGALKLHLSIHTDEKPFACDVCEYKCRQPSQLRQHKLIHTNEKPLACDLCDYKCRLLENLKQHLLKHTGEKPFSCSVCDYKCRQPGSLKKHLLIHTDEKHYRCYVCSYECNEVADLKVHFLMHDEKPYKCERCEFAAATPELLKGHIRVHVDEKSHKRKRLQKSKPPKSKSRKPAEREFACRICGAKFQSRKLTRQHVLKSHTSGKLFSCNRCERKFRQLVNLETHVSIHTGEKPFACDYCNFRCRQPGALKRHLLIHTGEKPFACDRCEYKCREPSKLKQHKLIHTDEKPYACDLCDYKCRLLGNLKEHLLKHTGEQPFSCGVCDYKCRQPGSLKKHLLIHTDEKHYRCYVCSYECNEVADLKVHFLTHDEKPYKCERCEFAAATPELLKGHIRVHVDEKSYKRKRLQKFHPTTERKFLDEKGFACRICGSKFKKRKLMRQHVLASHTSGKMFSCNLCEHKTVHRGNFEAHMLTHTGDKPFSCDYCDYKCRQSSALKRHMLIHTGEKPFSCDHCHYKCRDRGALTRHMSIHSDEKPFSCDLCDYKGRERRGLSRHKLTHILIPESGKLPGGKNEQLLTHTGEKLFKCDHCEHTTKLFGSLKRHLLVHTDERPFKCKLCDYAARRSEHLKSHVLTHTDDAPFECTLCSYKGKTLKRLRLHMCRHKDALTRHTLIHTGEMPFKCELCDYKGRYPGRFKEHVLTHIAERRYKCTVCNYSAKFPRILNKSSEVSTNDAAAAVAVQSSSENQPQEPKRQYRYSCKFCNYATNYSGHLKYHVYTHTGEKPYVCLVCDRRFNQPYNLEQHQRTHTGAKPFQCEICGASFRQAHHVRDHMSKHTNETPYVCETCGAKFKRAEYLQRHMPRHTGEKPFECSVCSAKFARNSSLQQHLLSHSDERPFQCMLCDRRFKSQKTLKWHVESHTGMKRYKCDWCICKFRLKYQLRRHLVAHGEGEGRLKCFDCAFGLDSAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466591;
90% Identity: iTF_00466591;
80% Identity: iTF_00465166;