Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72432481-72450162[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.022 31 6.3 0.3 21 44 88 111 80 115 0.90

2 21 0.003 4.2 9.1 0.0 21 47 116 142 112 149 0.85

3 21 7.7 1.1e+04 -1.8 0.0 21 44 144 167 139 176 0.83

4 21 0.6 8.3e+02 1.7 0.2 22 44 201 223 197 232 0.84

5 21 0.0021 2.9 9.6 0.0 17 43 281 307 271 314 0.86

6 21 0.74 1e+03 1.4 0.2 22 44 342 364 338 368 0.84

7 21 0.39 5.4e+02 2.3 0.0 18 44 368 394 365 402 0.80

8 21 2.9 4e+03 -0.5 0.2 23 44 401 422 396 428 0.81

9 21 1.7 2.4e+03 0.2 0.0 20 37 501 518 494 531 0.70

10 21 1.3 1.8e+03 0.7 0.0 20 44 557 581 549 585 0.86

11 21 3 4.2e+03 -0.5 0.1 22 44 587 609 572 613 0.81

12 21 0.49 6.9e+02 2.0 0.4 18 44 613 639 609 650 0.75

13 21 4.2 5.9e+03 -1.0 0.1 24 46 647 668 642 676 0.81

14 21 0.013 17 7.1 0.0 21 46 700 725 684 728 0.82

15 21 0.0088 12 7.6 0.5 8 44 780 813 775 823 0.87

16 21 7.6 1.1e+04 -1.8 0.1 26 44 823 841 817 844 0.83

17 21 1.5e-05 0.021 16.4 0.1 21 44 846 869 838 874 0.89

18 21 0.16 2.3e+02 3.5 0.2 21 46 874 898 870 905 0.87

19 21 0.72 1e+03 1.5 0.1 22 52 950 980 941 982 0.82

20 21 1.3 1.7e+03 0.7 0.2 21 43 1005 1027 1002 1032 0.74

21 21 0.21 2.9e+02 3.2 0.0 20 46 1059 1085 1046 1091 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.022	31	6.3	0.3	21	44	88	111	80	115	0.90
2	21	0.003	4.2	9.1	0.0	21	47	116	142	112	149	0.85
3	21	7.7	1.1e+04	-1.8	0.0	21	44	144	167	139	176	0.83
4	21	0.6	8.3e+02	1.7	0.2	22	44	201	223	197	232	0.84
5	21	0.0021	2.9	9.6	0.0	17	43	281	307	271	314	0.86
6	21	0.74	1e+03	1.4	0.2	22	44	342	364	338	368	0.84
7	21	0.39	5.4e+02	2.3	0.0	18	44	368	394	365	402	0.80
8	21	2.9	4e+03	-0.5	0.2	23	44	401	422	396	428	0.81
9	21	1.7	2.4e+03	0.2	0.0	20	37	501	518	494	531	0.70
10	21	1.3	1.8e+03	0.7	0.0	20	44	557	581	549	585	0.86
11	21	3	4.2e+03	-0.5	0.1	22	44	587	609	572	613	0.81
12	21	0.49	6.9e+02	2.0	0.4	18	44	613	639	609	650	0.75
13	21	4.2	5.9e+03	-1.0	0.1	24	46	647	668	642	676	0.81
14	21	0.013	17	7.1	0.0	21	46	700	725	684	728	0.82
15	21	0.0088	12	7.6	0.5	8	44	780	813	775	823	0.87
16	21	7.6	1.1e+04	-1.8	0.1	26	44	823	841	817	844	0.83
17	21	1.5e-05	0.021	16.4	0.1	21	44	846	869	838	874	0.89
18	21	0.16	2.3e+02	3.5	0.2	21	46	874	898	870	905	0.87
19	21	0.72	1e+03	1.5	0.1	22	52	950	980	941	982	0.82
20	21	1.3	1.7e+03	0.7	0.2	21	43	1005	1027	1002	1032	0.74
21	21	0.21	2.9e+02	3.2	0.0	20	46	1059	1085	1046	1091	0.84

Sequence Information

Coding Sequence: ATGGCAAACGAATTATGTGCGTGGTTTGAGTGGTACTCTAGGAATTCCCAATCAACAATTTCACCTGAACATGGCCTACACGGTTCTGATTTTGAGCCACTTGAATATAAACCCGATTACTCGTACATACTTTTAAGTGATGGCGTGAAGTTGTTCGCTCGTGACGATAACACGTGGCAACCAATCGGAAGCATTCCAACGATCCGTTCCAACGACACGCCCTTCGGCGGAAGATTGAAGCGACACGTATTGAAACACACCGACGAAAAGCCGTTCGTGTGCGATCGTTGCGGCCACAAGTGCCGACAGGCCGCGAACTTGAGGCTGCACATGCGAAAACAcgccgacgagaaaccgttcactTGCGATCTGTGCGCTCAGAAATTTAAGCGATCCGAAAGTTTGAAAAGGCACgtgttaatacacaccggcgagaagccgttcagttgtgagcTCTGCGATCACAAGAGCCGACGCCTGTCGGATCTGAAACTCCACATGGTAACGCACAAAAGTGAAAAATCGATCGAGTGCGCGCTTTGCGATTTCAAATGCTCACGGCCCCTATACTTGAAGCGGCACATGCtgacgcacaccggcgagaaacagTTCAAGTGTAACGTTTGCAGCTACGAATGCAATCGCTCTGGAAATTTGAGGTTGCACTTGCTAACGCACACCGACGAGAGGCCTTTCAAGTGCGGACGTTGTGAGTACGTAAGCAAAACGGCGAGATGCAAAACACCTGAACGTGATTCTGATTTTAAGCCATTTCAACATACACCCAATTACGTATGGTTAAGTAATGACGACAAGCCGTTTGCGTGCCAGCCAAGCGGAAGCGGAAGTTTCAAAGAGAAACCTTTCAACTGTGAAATTTGCAATCACAAATTTCGATTCGTAGAAAATTTAAGGAAACATTCGCTAACGCACGTTGAAGATATGCGTTTCATTTGCGACCGTTGCGGTTACATATTCAACTCACGCGCAAACATGAAGCGGCACATGAtgacgcacaccggcgagaaaaaGTTCAGTTGTGAAACCTGCGGTTACAAGTGCAGACGTTCGGAGGATCTGCAAcggcacatgttaaaacacgaCAGCCAacacgagaagccgttcgggtGTACCGTCTGCGGTTATAAATTCGCGCTGCCCATGTATTTGAAGCGGCACATGTtgacgcacaccggcgagaaacatTTCAAATGCAACGTGTGCAGTTACGAATGCAACAGGGCCGAAAATTTAAGGGCGCACGTTTTGAAGCACACCGATGAGAGGCGGTTTAAGTGCGCACGTTGCGAGTACGAGAGCAAGTCGGCCAGATATTTAAAGTTACACATGCGAGTGCATTCGGATGAGAAGCCGTTTAGATGCTCTTGGCTTTCCAAATCTACAATCTCTGATTTGAAACCATTTCAACATACACCCAATTACGCATCGTTAAGTAATGACGTGAAGCTGTTCGCGTGCCAACCAAGCGGAAGCGGACGTTCCAAAGAGAAGCCTTTCGCCTGTGAAATTTGCAATCACAAATTTCTATCTGTAGAGAGTTCAAGGAAACACATGCTAACGCACGTTGACGAAATGCGTTTCGTTTGCGACCGTTGCGGTTACAAATGCCGCTCGGTCAGCGTTTTGGAACAGCACATGCggaagcacaccggcgagaagccgttcagctgcGATCTGTGCGATCAAAAATTTAATCTACCGGGAAATATGAAAAGGCACATGATaacgcacaccgacgagaaacgcTTCAGTTGCGAAGTTTGCGAGTACAAGTGCCGACGTTTAACCGATCTGAAACGGCACACGTTAAAACACGACAGCCAACTTGAAAAGCCCTACAAATGTACCGTTTGCGATTACAGATGCGCTCTGCCCATCTACTTGAAGCGGCACTTGAtaacgcacaccggcgagaaacacTTCAAGTGCCACCTTTGCAGTTACGAATGCGCTCAGCTCGGAAACTTGAGGTCGCACATTTTAAAGCATACCGACGAGAGGCCGTTCAAGTGCGGTCGTTGTGAGTACGAAAGCAAGTCGGCCAGATATTTACAGGTACACATGCGAGTGCATtcggacgagaagccgttcaagTGCGACCTCTGTAAATACGCGTCCAAGTTTCAAAGTAACTTACGGAAACACCTCACGATACACGAAAACCTGCTCAGGTGTAATGTTTGCGAGTGTGCCACAATCTCGGACGTAGCGACACCTGGTGGTTCCGATCTTACATCCCTTGAATATAAGCCCAGTTACGTACTGCTAAGTGATGGCGTCAAGCTTTTCGTCGGCGATCATTCCGCTTACACGCGCCAACCAATCGCAAGCGAGAAGCCCCCATCCAGCGAGAAGCCTTTCAACTGTAAAATTTGCAGCTACAAAAGCCGCTTGGCCGAAAGTTTAAGTAGGCACATGTTAACACACACCGACGAAATGCGCTTCGTTTGCGACCGTTGCGGTTACAAATGCCGCCAGGCCGCAAGTCTAAGAGGACACATGCGAAAGCACACCGATGAGGAACCGTTCACTTGCGACATCTGCGCTCAAGAATTTCAGCACTCTAGAAATTTAAAGAGacacatgttaacgcacaccggcgaaaagccgGTCGCCTGCGAgttttgcgattacaaatgccggcGTTTATCAGACCTGAAACGCCACATGTTGCAGCACACCGGAAGAAAGAAGACCCGCCCCGATGAGAAACCTTTAAGGAGGCGTACGCATAACGCCGGCGAAATGCGCTTCGTTTGCGACCGTTGCGGTTACAAATGCCGCTCGGTCGCACTTTTGAGGCAGCACATGcgaaagcacaccgacgaggaACGGGTCTGTTGTGACCTGTGCGACCAAACGTTCAAGCACTCCGCGACCTTGAAAAagcacatgttaatacacagcGACacgaagccgttcagttgtgaattctgcgattacaaatgccgacgtATAACAGACCTGAAACAGCACAAGGTGATAcataccgacgagaaaccgttcgggTGCcctctttgcgattataaatgtgcGCTGCGTTTGTATTTGAAGCGACACATGTTGACGCACACCGGCGAAAAAGAAAAGTGCCATCTTTGCAGTTTCGAGACCAGTCGTCCTGGAGGTTTAAAGCTGCACTTAGTGAAGCATTCCGATGAGAGGCCCTTTAAATGCGGAGATTGTGAGCATGTAAGCAAAACAGCCACGCATTTAAAACGACACATGCGAGTGCATTCTGCTGTTAAGAAAAAAGACCGCGTAAGAGGACGTGCAAGTAAGAATGTGTCCTGA
Protein Sequence: MANELCAWFEWYSRNSQSTISPEHGLHGSDFEPLEYKPDYSYILLSDGVKLFARDDNTWQPIGSIPTIRSNDTPFGGRLKRHVLKHTDEKPFVCDRCGHKCRQAANLRLHMRKHADEKPFTCDLCAQKFKRSESLKRHVLIHTGEKPFSCELCDHKSRRLSDLKLHMVTHKSEKSIECALCDFKCSRPLYLKRHMLTHTGEKQFKCNVCSYECNRSGNLRLHLLTHTDERPFKCGRCEYVSKTARCKTPERDSDFKPFQHTPNYVWLSNDDKPFACQPSGSGSFKEKPFNCEICNHKFRFVENLRKHSLTHVEDMRFICDRCGYIFNSRANMKRHMMTHTGEKKFSCETCGYKCRRSEDLQRHMLKHDSQHEKPFGCTVCGYKFALPMYLKRHMLTHTGEKHFKCNVCSYECNRAENLRAHVLKHTDERRFKCARCEYESKSARYLKLHMRVHSDEKPFRCSWLSKSTISDLKPFQHTPNYASLSNDVKLFACQPSGSGRSKEKPFACEICNHKFLSVESSRKHMLTHVDEMRFVCDRCGYKCRSVSVLEQHMRKHTGEKPFSCDLCDQKFNLPGNMKRHMITHTDEKRFSCEVCEYKCRRLTDLKRHTLKHDSQLEKPYKCTVCDYRCALPIYLKRHLITHTGEKHFKCHLCSYECAQLGNLRSHILKHTDERPFKCGRCEYESKSARYLQVHMRVHSDEKPFKCDLCKYASKFQSNLRKHLTIHENLLRCNVCECATISDVATPGGSDLTSLEYKPSYVLLSDGVKLFVGDHSAYTRQPIASEKPPSSEKPFNCKICSYKSRLAESLSRHMLTHTDEMRFVCDRCGYKCRQAASLRGHMRKHTDEEPFTCDICAQEFQHSRNLKRHMLTHTGEKPVACEFCDYKCRRLSDLKRHMLQHTGRKKTRPDEKPLRRRTHNAGEMRFVCDRCGYKCRSVALLRQHMRKHTDEERVCCDLCDQTFKHSATLKKHMLIHSDTKPFSCEFCDYKCRRITDLKQHKVIHTDEKPFGCPLCDYKCALRLYLKRHMLTHTGEKEKCHLCSFETSRPGGLKLHLVKHSDERPFKCGDCEHVSKTATHLKRHMRVHSAVKKKDRVRGRASKNVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466586;
90% Identity: iTF_00465163;
80% Identity: iTF_00465163;