Dhop036404.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:72432481-72450162[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 8.9e-05 0.0098 17.8 4.1 1 23 92 114 92 114 0.98
2 29 8e-05 0.0088 17.9 0.9 1 23 120 142 120 142 0.98
3 29 0.00079 0.088 14.8 2.0 1 23 148 170 148 170 0.98
4 29 0.00091 0.1 14.6 1.4 2 23 177 198 176 198 0.97
5 29 0.00023 0.026 16.5 2.6 1 23 204 226 204 226 0.99
6 29 0.002 0.22 13.5 3.6 1 23 289 311 289 311 0.97
7 29 4.6e-06 0.00051 21.8 0.9 1 23 317 339 317 339 0.98
8 29 1.7e-05 0.0019 20.0 3.6 1 23 345 367 345 367 0.98
9 29 8.5e-05 0.0094 17.8 0.3 3 23 377 397 375 397 0.98
10 29 0.00026 0.029 16.3 1.5 1 23 403 425 403 425 0.98
11 29 0.0024 0.26 13.3 1.0 1 23 431 453 431 453 0.99
12 29 1.4 1.5e+02 4.6 1.7 1 23 506 528 506 528 0.95
13 29 0.00061 0.068 15.1 2.2 1 23 534 556 534 556 0.98
14 29 3.4e-05 0.0037 19.1 0.5 1 23 562 584 562 584 0.98
15 29 0.0028 0.31 13.1 4.1 1 23 590 612 590 612 0.98
16 29 0.00067 0.074 15.0 1.5 1 23 620 642 620 642 0.99
17 29 0.0019 0.22 13.6 3.7 1 23 648 670 648 670 0.98
18 29 0.00081 0.09 14.8 0.7 1 23 676 698 676 698 0.99
19 29 0.00035 0.038 15.9 2.1 1 23 704 726 704 726 0.98
20 29 0.002 0.22 13.5 1.1 1 23 794 816 794 816 0.98
21 29 9e-05 0.01 17.8 1.9 1 23 822 844 822 844 0.98
22 29 4.4e-05 0.0049 18.7 2.6 1 23 850 872 850 872 0.99
23 29 0.00042 0.046 15.7 3.0 3 23 880 900 879 900 0.97
24 29 0.00024 0.026 16.4 2.5 1 23 925 947 925 947 0.98
25 29 6.4e-05 0.0071 18.2 3.8 3 23 955 975 953 975 0.96
26 29 0.047 5.2 9.2 3.5 1 23 981 1003 981 1003 0.95
27 29 0.0093 1 11.4 1.6 3 23 1011 1031 1009 1031 0.98
28 29 0.073 8.1 8.6 1.3 2 23 1037 1058 1037 1058 0.97
29 29 3.6e-05 0.004 19.0 3.7 1 23 1064 1086 1064 1086 0.99

Sequence Information

Coding Sequence
ATGGCAAACGAATTATGTGCGTGGTTTGAGTGGTACTCTAGGAATTCCCAATCAACAATTTCACCTGAACATGGCCTACACGGTTCTGATTTTGAGCCACTTGAATATAAACCCGATTACTCGTACATACTTTTAAGTGATGGCGTGAAGTTGTTCGCTCGTGACGATAACACGTGGCAACCAATCGGAAGCATTCCAACGATCCGTTCCAACGACACGCCCTTCGGCGGAAGATTGAAGCGACACGTATTGAAACACACCGACGAAAAGCCGTTCGTGTGCGATCGTTGCGGCCACAAGTGCCGACAGGCCGCGAACTTGAGGCTGCACATGCGAAAACAcgccgacgagaaaccgttcactTGCGATCTGTGCGCTCAGAAATTTAAGCGATCCGAAAGTTTGAAAAGGCACgtgttaatacacaccggcgagaagccgttcagttgtgagcTCTGCGATCACAAGAGCCGACGCCTGTCGGATCTGAAACTCCACATGGTAACGCACAAAAGTGAAAAATCGATCGAGTGCGCGCTTTGCGATTTCAAATGCTCACGGCCCCTATACTTGAAGCGGCACATGCtgacgcacaccggcgagaaacagTTCAAGTGTAACGTTTGCAGCTACGAATGCAATCGCTCTGGAAATTTGAGGTTGCACTTGCTAACGCACACCGACGAGAGGCCTTTCAAGTGCGGACGTTGTGAGTACGTAAGCAAAACGGCGAGATGCAAAACACCTGAACGTGATTCTGATTTTAAGCCATTTCAACATACACCCAATTACGTATGGTTAAGTAATGACGACAAGCCGTTTGCGTGCCAGCCAAGCGGAAGCGGAAGTTTCAAAGAGAAACCTTTCAACTGTGAAATTTGCAATCACAAATTTCGATTCGTAGAAAATTTAAGGAAACATTCGCTAACGCACGTTGAAGATATGCGTTTCATTTGCGACCGTTGCGGTTACATATTCAACTCACGCGCAAACATGAAGCGGCACATGAtgacgcacaccggcgagaaaaaGTTCAGTTGTGAAACCTGCGGTTACAAGTGCAGACGTTCGGAGGATCTGCAAcggcacatgttaaaacacgaCAGCCAacacgagaagccgttcgggtGTACCGTCTGCGGTTATAAATTCGCGCTGCCCATGTATTTGAAGCGGCACATGTtgacgcacaccggcgagaaacatTTCAAATGCAACGTGTGCAGTTACGAATGCAACAGGGCCGAAAATTTAAGGGCGCACGTTTTGAAGCACACCGATGAGAGGCGGTTTAAGTGCGCACGTTGCGAGTACGAGAGCAAGTCGGCCAGATATTTAAAGTTACACATGCGAGTGCATTCGGATGAGAAGCCGTTTAGATGCTCTTGGCTTTCCAAATCTACAATCTCTGATTTGAAACCATTTCAACATACACCCAATTACGCATCGTTAAGTAATGACGTGAAGCTGTTCGCGTGCCAACCAAGCGGAAGCGGACGTTCCAAAGAGAAGCCTTTCGCCTGTGAAATTTGCAATCACAAATTTCTATCTGTAGAGAGTTCAAGGAAACACATGCTAACGCACGTTGACGAAATGCGTTTCGTTTGCGACCGTTGCGGTTACAAATGCCGCTCGGTCAGCGTTTTGGAACAGCACATGCggaagcacaccggcgagaagccgttcagctgcGATCTGTGCGATCAAAAATTTAATCTACCGGGAAATATGAAAAGGCACATGATaacgcacaccgacgagaaacgcTTCAGTTGCGAAGTTTGCGAGTACAAGTGCCGACGTTTAACCGATCTGAAACGGCACACGTTAAAACACGACAGCCAACTTGAAAAGCCCTACAAATGTACCGTTTGCGATTACAGATGCGCTCTGCCCATCTACTTGAAGCGGCACTTGAtaacgcacaccggcgagaaacacTTCAAGTGCCACCTTTGCAGTTACGAATGCGCTCAGCTCGGAAACTTGAGGTCGCACATTTTAAAGCATACCGACGAGAGGCCGTTCAAGTGCGGTCGTTGTGAGTACGAAAGCAAGTCGGCCAGATATTTACAGGTACACATGCGAGTGCATtcggacgagaagccgttcaagTGCGACCTCTGTAAATACGCGTCCAAGTTTCAAAGTAACTTACGGAAACACCTCACGATACACGAAAACCTGCTCAGGTGTAATGTTTGCGAGTGTGCCACAATCTCGGACGTAGCGACACCTGGTGGTTCCGATCTTACATCCCTTGAATATAAGCCCAGTTACGTACTGCTAAGTGATGGCGTCAAGCTTTTCGTCGGCGATCATTCCGCTTACACGCGCCAACCAATCGCAAGCGAGAAGCCCCCATCCAGCGAGAAGCCTTTCAACTGTAAAATTTGCAGCTACAAAAGCCGCTTGGCCGAAAGTTTAAGTAGGCACATGTTAACACACACCGACGAAATGCGCTTCGTTTGCGACCGTTGCGGTTACAAATGCCGCCAGGCCGCAAGTCTAAGAGGACACATGCGAAAGCACACCGATGAGGAACCGTTCACTTGCGACATCTGCGCTCAAGAATTTCAGCACTCTAGAAATTTAAAGAGacacatgttaacgcacaccggcgaaaagccgGTCGCCTGCGAgttttgcgattacaaatgccggcGTTTATCAGACCTGAAACGCCACATGTTGCAGCACACCGGAAGAAAGAAGACCCGCCCCGATGAGAAACCTTTAAGGAGGCGTACGCATAACGCCGGCGAAATGCGCTTCGTTTGCGACCGTTGCGGTTACAAATGCCGCTCGGTCGCACTTTTGAGGCAGCACATGcgaaagcacaccgacgaggaACGGGTCTGTTGTGACCTGTGCGACCAAACGTTCAAGCACTCCGCGACCTTGAAAAagcacatgttaatacacagcGACacgaagccgttcagttgtgaattctgcgattacaaatgccgacgtATAACAGACCTGAAACAGCACAAGGTGATAcataccgacgagaaaccgttcgggTGCcctctttgcgattataaatgtgcGCTGCGTTTGTATTTGAAGCGACACATGTTGACGCACACCGGCGAAAAAGAAAAGTGCCATCTTTGCAGTTTCGAGACCAGTCGTCCTGGAGGTTTAAAGCTGCACTTAGTGAAGCATTCCGATGAGAGGCCCTTTAAATGCGGAGATTGTGAGCATGTAAGCAAAACAGCCACGCATTTAAAACGACACATGCGAGTGCATTCTGCTGTTAAGAAAAAAGACCGCGTAAGAGGACGTGCAAGTAAGAATGTGTCCTGA
Protein Sequence
MANELCAWFEWYSRNSQSTISPEHGLHGSDFEPLEYKPDYSYILLSDGVKLFARDDNTWQPIGSIPTIRSNDTPFGGRLKRHVLKHTDEKPFVCDRCGHKCRQAANLRLHMRKHADEKPFTCDLCAQKFKRSESLKRHVLIHTGEKPFSCELCDHKSRRLSDLKLHMVTHKSEKSIECALCDFKCSRPLYLKRHMLTHTGEKQFKCNVCSYECNRSGNLRLHLLTHTDERPFKCGRCEYVSKTARCKTPERDSDFKPFQHTPNYVWLSNDDKPFACQPSGSGSFKEKPFNCEICNHKFRFVENLRKHSLTHVEDMRFICDRCGYIFNSRANMKRHMMTHTGEKKFSCETCGYKCRRSEDLQRHMLKHDSQHEKPFGCTVCGYKFALPMYLKRHMLTHTGEKHFKCNVCSYECNRAENLRAHVLKHTDERRFKCARCEYESKSARYLKLHMRVHSDEKPFRCSWLSKSTISDLKPFQHTPNYASLSNDVKLFACQPSGSGRSKEKPFACEICNHKFLSVESSRKHMLTHVDEMRFVCDRCGYKCRSVSVLEQHMRKHTGEKPFSCDLCDQKFNLPGNMKRHMITHTDEKRFSCEVCEYKCRRLTDLKRHTLKHDSQLEKPYKCTVCDYRCALPIYLKRHLITHTGEKHFKCHLCSYECAQLGNLRSHILKHTDERPFKCGRCEYESKSARYLQVHMRVHSDEKPFKCDLCKYASKFQSNLRKHLTIHENLLRCNVCECATISDVATPGGSDLTSLEYKPSYVLLSDGVKLFVGDHSAYTRQPIASEKPPSSEKPFNCKICSYKSRLAESLSRHMLTHTDEMRFVCDRCGYKCRQAASLRGHMRKHTDEEPFTCDICAQEFQHSRNLKRHMLTHTGEKPVACEFCDYKCRRLSDLKRHMLQHTGRKKTRPDEKPLRRRTHNAGEMRFVCDRCGYKCRSVALLRQHMRKHTDEERVCCDLCDQTFKHSATLKKHMLIHSDTKPFSCEFCDYKCRRITDLKQHKVIHTDEKPFGCPLCDYKCALRLYLKRHMLTHTGEKEKCHLCSFETSRPGGLKLHLVKHSDERPFKCGDCEHVSKTATHLKRHMRVHSAVKKKDRVRGRASKNVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00466586;
90% Identity
iTF_00465626;
80% Identity
iTF_00465626;