Dpar001072.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
-
Assembly
GCA_958336345.1
Location
OY284475.1:8216278-8242786[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 0.00012 0.011 17.6 4.1 1 23 215 237 215 237 0.98
2 32 0.00011 0.0099 17.7 0.9 1 23 243 265 243 265 0.98
3 32 0.0011 0.098 14.6 2.0 1 23 271 293 271 293 0.98
4 32 0.0012 0.11 14.4 1.4 2 23 300 321 299 321 0.97
5 32 0.00031 0.029 16.3 2.6 1 23 327 349 327 349 0.99
6 32 0.0016 0.15 14.0 3.3 1 23 416 438 416 438 0.98
7 32 9.8e-06 0.0009 21.0 1.5 1 23 444 466 444 466 0.98
8 32 4.4e-05 0.0041 18.9 4.4 1 23 472 494 472 494 0.98
9 32 0.00011 0.011 17.6 0.3 3 23 504 524 502 524 0.98
10 32 0.00035 0.032 16.1 1.5 1 23 530 552 530 552 0.98
11 32 0.0022 0.2 13.6 1.1 1 23 558 580 558 580 0.99
12 32 0.00025 0.023 16.5 0.7 1 23 586 608 586 608 0.99
13 32 0.012 1.1 11.2 2.4 2 23 613 634 612 634 0.96
14 32 1.7 1.6e+02 4.5 1.3 11 23 633 645 631 645 0.92
15 32 0.00082 0.076 14.9 2.2 1 23 651 673 651 673 0.98
16 32 4.5e-05 0.0042 18.9 0.5 1 23 679 701 679 701 0.98
17 32 0.061 5.6 9.0 4.1 3 23 709 729 707 729 0.97
18 32 0.00041 0.038 15.9 1.7 1 23 737 759 737 759 0.99
19 32 0.0026 0.24 13.3 3.7 1 23 765 787 765 787 0.98
20 32 0.0011 0.1 14.5 0.7 1 23 793 815 793 815 0.99
21 32 0.00046 0.043 15.7 2.1 1 23 821 843 821 843 0.98
22 32 0.012 1.1 11.3 2.4 2 23 848 869 847 869 0.96
23 32 0.00066 0.061 15.2 1.1 1 23 964 986 964 986 0.98
24 32 8.4e-05 0.0078 18.0 1.8 1 23 992 1014 992 1014 0.99
25 32 5.9e-05 0.0055 18.5 2.6 1 23 1020 1042 1020 1042 0.99
26 32 0.003 0.27 13.2 2.5 3 23 1050 1070 1049 1070 0.96
27 32 0.00032 0.029 16.2 2.5 1 23 1095 1117 1095 1117 0.98
28 32 1.4e-05 0.0013 20.5 1.6 2 23 1124 1145 1123 1145 0.96
29 32 0.063 5.8 9.0 3.5 1 23 1151 1173 1151 1173 0.95
30 32 0.021 2 10.5 1.0 3 23 1181 1201 1179 1201 0.98
31 32 0.099 9.1 8.4 1.3 2 23 1207 1228 1207 1228 0.97
32 32 9.9e-05 0.0092 17.8 4.3 1 23 1234 1256 1234 1256 0.99

Sequence Information

Coding Sequence
ATGCAGCGTTACGAAGGGACAACGGAACAGATGCCACGATGGTTCACCAGTTGGACGGAACAACAACAGGAACTAATGTCGGGAGTTTTGGCGGCCTTGCAGAGCATCGTCAGCGAGCGGCAGCCAGGAGAGACGACATCATCTGCGGCGAGCAGCTCCACGTCCGAAGTCTCGACGGTTCAAGAGCGCGGTTCTTCAGCGTCAAGTCGGGTAAGAAATGTACCTGTGGGCTGTCGGGATACGATCGAAGCCGTGTCGAACTCGTCGGGGCCATGTGCAATTTCAGGGGCAAACCGGAGCGTCTCTGGAGGGGCCTTAAGGGGGCTTCACACGGAGACCCTGAACGACATACTGACGCCGCGCCTTGACCGTGACACTCGGACGTGTACTTCTGGACCGAAATACTCTAGGAATTCCAAATCAACCATTTCACCTGAACATGGCGTATACGGTTCTGATTTTGGGTCACTTGAATGTAAACCCAATTACATACTGTTAAGTGATGGCGTGAAGTTCTTCGCCGGTGACGATAACACGTGGCAACCAATCGGAACCATTCCAACGATCCATTCTGACGAGACGCCCGCGCCCTTCGGCGAAAGATTGAAGCGACACGTATTGAAACGCACCGACGAAAAGCCGTTCGTCTGCGATCGTTGCGGCCACAAGTGCCGACAGGCCGCGAACTTGAGACTGCACATGCGAAAGCAcgccgacgagaaaccgttcactTGCGATCTGTGCGCTCAGAAATTTAAGCGATCCGAAAGTTTGAAGAGGCACgtgttaatacacaccggcgagaagccgtttagttgtgagcTCTGCGATCACAAGAGCCGGCGCTTGTCGGATCTGAAACTCCACATGGTAACGCACAAAAGTGAAAAATCGATCGAGTGCGCGCTTTGCGATTTCAAATGCTCGCGGCCCCTGTACTTGAAGCGGCACATGTtgacgcacaccggcgagaaagaGTTCAAGTGCAACGTTTGCAGCTACGAATGCAATCGCTCTGGAAATTTGAGGTTGCACTTGCTAACGCACACCGACGAGAGGCCTTTCAAGTGCGGACGTTGTGAGTACGTAAGCAAAACGGCGAGATGCTCTTGGATTTCGGACGCAAAGACACGTGAACTTGATTCTGATTTTAAGCCATTTCAACATACACCCAATTACGTATGGTTAAGTAATGACGTAAAGCCTTTCCAGCCAAGCGGAAGCGGAAGTTTCAAAGAGAAGCCTTTCAACTGTGAAATTTGCAACCACAAATTTCGATTTGTAGAAGATTTAAGGAAACATACGCTAACGCACGCTGACGAATTGCGTTTCATTTGCGACCGTTGCGGTTACATATTCAACTCGCGTACAAACATGAAGCGGCATATGAtgacgcacaccggcgagaagaaGTTCCGTTGTGAAACCTGCGATTACAAGTGTAGACGTTCGGAGGATCTGCAAcggcacatgttaaaacacgACAGCCAacacgagaagccgttcgggtGTACCGTCTGCGGTTATAAATTCGCGCTGCCCATGTATTTGAAGCGGCACATGCtgacgcacaccggcgagaaacatTTCAAGTGCAACGTTTGCAGTTACGAATGCAACCGGGCCGAAAATTTAAGGGCGCACGTTTtgaagcacaccgacgagaggCGGTTTAAGTGCGGACGTTGCGAGTACGAGAGCAAGTCGGCCAGATATTTAAAGTTACACATGCGAGTGCATtcggacgagaagccgtttaaGTGTGACCTTTGCGAATACGCGGCTAAGTTTCAAGGTAACTTAACGAAACACATGTCAACGCACGAGGAGTTGCTCAAGTGTAACGTTTGTGAATACACTTGTAAATCGGGCAAGGATTTGAAAAGGCATGTCGCGTCACATTCAGAGAGTTTAAGGAAACACATGCTAACGCACGCTGACGAAATGCGTTTCGTTTGCGACCGTTGCGGTTACAAGTGCCGCTCGGTCAGTGTTTTGGAACAGCACATGCggaagcacaccggcgagaagccgttcagctgtgaCCTGTGCGATCAAAAATTTAATCTACCGGGAAATATGAAAAGGCACATGATaacgcacaccgacgagaaacgcTTCGGTTGCGAATTTTGCGAGTACAAGTGCCGACGTTTGACGGACCTGAAACGGCACACGTTAAAACATGACGGCCAGCTCGAAAAGCCGTACAGATGTAGcgtttgcgattacaaatgcgcGCTGCCCATCTATTTGAAGCGGCACATGTTGAcgcacaccggtgagaaacaCTTCAAGTGCCACCTTTGCAGTTACGAATGCGCTCAGCTCGGAAATTTGAGGTCGCACATTCTGAAGCATACCGACGAGAGGCCGTTTAAGTGCGGACGTTGCGAGTACGAGAGCAAGTCGGCCAGATATTTACAGGTACACATGCGAGTGCATTCGGATGAGAAGCCGTTCAAGTGCGACCTTTGTAAATATGCGTCCAAGTTTCAAAGTAACTTACGGAAACACCTCACGATTCACGAGAACCTGCTCAAGTGTAATGTTTGCGAGTACACGTGTAAATTGGCCAAGGATTTAAAGAGGCATGTCACGTCACATTCAGGAAAATTTAGTTGCACGTGCGACTTTATTTGTATTAACAAATATGTCGTCGAACAATTCGACGAGCAAGTCAACGAACGTGACGACAAATTTATTGAAGGATACGAGTGTGCCACAATCTCGGACGTAACGACACCTGGCGGTTCCGATCTTACATCCCTCGAATCTAAGCCCAATTACGTACTCTTAAGTGATGGCGTCAAGCTTTTCGTCGGCGATCATTCCGCTTACACACGCCAACCAATCGCAAGCGAGAAGCCCCCATCCAGCGAGAAGCCCTTCAGCTGTAAAATTTGCAGCTACAAAAGCCGCTTGGCCGAAAGTTTGACGAGgcacatgttaacacacaccgacgaAATGCGTTACGTTTGCGACCGTTGCGGTTACAAATGCCGCCAGGCCGCAAGCCTGAGAGGGCATATGCGAAAGCACACCGATGCGGAACCGTTCACTTGCGACATCTGCGCTCAAGAATTTCAGCACTCTAGAAATTTGAAGAGAcacatgttaacgcacaccggcgagaagccagTCGCCTGCGaattttgcgattacaaatgccggcGTTTATCGGACCTGAAACGCCACGTGTTGCAACACACCGGAAGAAAGAAGACCCGCCCCGATGAGAAACCTTTAAGGAGGCGTACGCATAACGTCGGCGAAATGCGCTTCGTTTGCGACCGTTGCGGTTACAAATGCCGCTCGGTCGCACTTTTGAGGCAGCACATGcgaaagcacaccgacgaggaACGGGTCAGTTGTGACCTGTGCGACCAAACGTTCAAGCACTCCGCGACCTTGAAAAagcacatgttaatacacaccgacgagaagccgttcagttgtgaattctgcgattataaatgccgacgtaTAACAGACCTGAAACAGCACAAGGTGATAcataccgacgagaaaccgttcgggTGCcctctttgcgattataagtgcgcGCTACGTTTGTATTTGAAGCGGCACATGTTGgtgcacaccggcgagaaagaAAAGTGCCACCTTTGCAGTTTCGAGACCAGTCGTCCTGGAGGCTTAAAGTTGCACTTGGTAAAGCATTCCGATGAGAGGCCCTTTAAGTGCGAAGATTGTGAGCATGAAAGCAAAACAGCCACGCATTTAAAACGGCACATGCGAGTGCATTCTGTTATTAAGAAAAAGGACCGCTTAAAAGGACGTGCAAGTAAGAATGTGTCCtga
Protein Sequence
MQRYEGTTEQMPRWFTSWTEQQQELMSGVLAALQSIVSERQPGETTSSAASSSTSEVSTVQERGSSASSRVRNVPVGCRDTIEAVSNSSGPCAISGANRSVSGGALRGLHTETLNDILTPRLDRDTRTCTSGPKYSRNSKSTISPEHGVYGSDFGSLECKPNYILLSDGVKFFAGDDNTWQPIGTIPTIHSDETPAPFGERLKRHVLKRTDEKPFVCDRCGHKCRQAANLRLHMRKHADEKPFTCDLCAQKFKRSESLKRHVLIHTGEKPFSCELCDHKSRRLSDLKLHMVTHKSEKSIECALCDFKCSRPLYLKRHMLTHTGEKEFKCNVCSYECNRSGNLRLHLLTHTDERPFKCGRCEYVSKTARCSWISDAKTRELDSDFKPFQHTPNYVWLSNDVKPFQPSGSGSFKEKPFNCEICNHKFRFVEDLRKHTLTHADELRFICDRCGYIFNSRTNMKRHMMTHTGEKKFRCETCDYKCRRSEDLQRHMLKHDSQHEKPFGCTVCGYKFALPMYLKRHMLTHTGEKHFKCNVCSYECNRAENLRAHVLKHTDERRFKCGRCEYESKSARYLKLHMRVHSDEKPFKCDLCEYAAKFQGNLTKHMSTHEELLKCNVCEYTCKSGKDLKRHVASHSESLRKHMLTHADEMRFVCDRCGYKCRSVSVLEQHMRKHTGEKPFSCDLCDQKFNLPGNMKRHMITHTDEKRFGCEFCEYKCRRLTDLKRHTLKHDGQLEKPYRCSVCDYKCALPIYLKRHMLTHTGEKHFKCHLCSYECAQLGNLRSHILKHTDERPFKCGRCEYESKSARYLQVHMRVHSDEKPFKCDLCKYASKFQSNLRKHLTIHENLLKCNVCEYTCKLAKDLKRHVTSHSGKFSCTCDFICINKYVVEQFDEQVNERDDKFIEGYECATISDVTTPGGSDLTSLESKPNYVLLSDGVKLFVGDHSAYTRQPIASEKPPSSEKPFSCKICSYKSRLAESLTRHMLTHTDEMRYVCDRCGYKCRQAASLRGHMRKHTDAEPFTCDICAQEFQHSRNLKRHMLTHTGEKPVACEFCDYKCRRLSDLKRHVLQHTGRKKTRPDEKPLRRRTHNVGEMRFVCDRCGYKCRSVALLRQHMRKHTDEERVSCDLCDQTFKHSATLKKHMLIHTDEKPFSCEFCDYKCRRITDLKQHKVIHTDEKPFGCPLCDYKCALRLYLKRHMLVHTGEKEKCHLCSFETSRPGGLKLHLVKHSDERPFKCEDCEHESKTATHLKRHMRVHSVIKKKDRLKGRASKNVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00465626; iTF_00465163;
90% Identity
-
80% Identity
-