Druf049503.1
Basic Information
- Insect
- Dioctria rufipes
- Gene Symbol
- -
- Assembly
- GCA_963924295.1
- Location
- OZ002741.1:107787698-107789170[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0099 2.8e+02 4.3 0.2 21 43 204 226 198 231 0.84 2 9 0.00034 9.7 9.0 0.1 21 49 232 259 225 262 0.80 3 9 0.00064 18 8.1 0.6 18 45 256 283 252 290 0.87 4 9 0.11 3.3e+03 0.9 0.2 21 45 287 311 283 314 0.88 5 9 0.041 1.2e+03 2.3 0.2 21 45 315 339 311 346 0.87 6 9 0.0022 64 6.4 0.2 21 46 371 396 355 403 0.83 7 9 0.078 2.2e+03 1.4 0.0 21 43 399 421 395 426 0.86 8 9 9.4e-05 2.7 10.8 0.1 21 45 427 451 416 454 0.86 9 9 4.1e-08 0.0012 21.5 0.6 23 48 457 482 453 484 0.92
Sequence Information
- Coding Sequence
- atgGCTGGGAAAATGCTTGAGATGAAAAGTATACTTCTAGCTGATTTCACCGCTGATAGCTGCAGTAGTTTTTCCATAGGGGAAAACAGCAATTCTTCTGACTTTATGCTGACAGAAGAAATGATAAAAAAGGAACCTGAGTTCATAATTGAAGACGAGGAGGAAGGCGagaaaataaggaattttttaaagaaaactaaaattaatgATCAAGACAGGAAAAATTTGAATTGGCACAACTGTATTATTTGCGAGGAAAAGTTTTTAAGTATTGAAGCACTTTCTTCTCATGTTCAAGggcatataaaaaaagaaaaatccgaAACTGAAGGTCGTACCTTAAACCACCGACAAGCCCCAAAAACTCAACTCACTGGATTCACACGAGAAGAGTGCATCAAagattatgtaaaaattaaagtgGATTTGCAAGGAGATCCTacatatacttgcaaattgtgcGCAGATAAACATTTTACCAAGTTAGTTGGTATACAAAATCATATGAGAATCCATCAAAATCCTATTTACAAAGAAAGAAACTGTCATGTGTGTAAGCGATCCTTTTTAAGACGAGACACATTACTAGTTCATCTGAGGACACATACTCAAGAACGGCCGTTTAAATGTGATATTTGCAGGGCAACATTTTCTCACTCTAGTTCCTTAGTATCCCATAAACGAATTCATTCAGGAGAAAAGCCGTTTTCTTGCGATATATGCCAGCAGGTATTTCGCGAATCTGGACAAATGTCGGCTCATCGGAGAACCCACTTCGAGAAAACGCTAAAATGTCCACAATGTGATCAATACTATGCATCTTCCAAGAATTTGCGGGCCCATCTAAGAACACATACCGGTGAAAGGCCTTATAATTGTAACCAATGTGAAAAATCATTCCGGACATCTACTGCACTAACGATGCATATCCGCGTTCATACAGGAGAAAGACCTTATAAATGTTCCAACTGTCCATATGCTACGAAACAATCAGGATCATTAAAGGCTCATATGCGAACACACACTGGTGAAAGGCCATTTAAATGCGATCTTTGTGACCGAGCGTATACAGAAAAGAAACGATTAGTAACTCACTATAGGACCCACACTGGAGAACGGCCTTATAAATGTAACCATTGTGACTCCGCATTCGTTCGAAGTGATAATTTGCGTAGTCATATCAGAACACACACTGGAGAAAAGCCATTTCAATGTGAAGTTTGTAACAAGACATTTGCACAGAAAACTACTCTCAAAGCTCATGAAAAAGTTCATTCTGGGGAAAGACCTTATTCCTGTCCTTTCTGTAATTTGACCTTCCGTCAATCAGGTACATTAGTTACGCATATGCGAGTTCATGATGGTCAGAGACCTTTCCCATGCCAAATTTGTGATAGAACTTTCAGACAGAGTAGCAATCTTCGCCGGCACATCGAGGTAGATCATGGAGAAGTAACAGAGCGGTTATTCTAA
- Protein Sequence
- MAGKMLEMKSILLADFTADSCSSFSIGENSNSSDFMLTEEMIKKEPEFIIEDEEEGEKIRNFLKKTKINDQDRKNLNWHNCIICEEKFLSIEALSSHVQGHIKKEKSETEGRTLNHRQAPKTQLTGFTREECIKDYVKIKVDLQGDPTYTCKLCADKHFTKLVGIQNHMRIHQNPIYKERNCHVCKRSFLRRDTLLVHLRTHTQERPFKCDICRATFSHSSSLVSHKRIHSGEKPFSCDICQQVFRESGQMSAHRRTHFEKTLKCPQCDQYYASSKNLRAHLRTHTGERPYNCNQCEKSFRTSTALTMHIRVHTGERPYKCSNCPYATKQSGSLKAHMRTHTGERPFKCDLCDRAYTEKKRLVTHYRTHTGERPYKCNHCDSAFVRSDNLRSHIRTHTGEKPFQCEVCNKTFAQKTTLKAHEKVHSGERPYSCPFCNLTFRQSGTLVTHMRVHDGQRPFPCQICDRTFRQSSNLRRHIEVDHGEVTERLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00425042;
- 90% Identity
- iTF_00455353;
- 80% Identity
- iTF_00455353;