Druf049503.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dioctria rufipes
Gene Symbol
-
Assembly
GCA_963924295.1
Location
OZ002741.1:107787698-107789170[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.041 19 8.5 1.5 1 23 149 172 149 172 0.95
2 12 0.00052 0.24 14.5 3.2 3 23 182 202 181 202 0.98
3 12 7.3e-06 0.0034 20.3 2.4 1 23 208 230 208 230 0.99
4 12 1.8e-05 0.0083 19.1 0.5 1 23 236 258 236 258 0.98
5 12 1.5e-06 0.00071 22.4 0.6 2 23 264 285 263 285 0.97
6 12 3.1e-07 0.00014 24.6 1.0 1 23 291 313 291 313 0.98
7 12 4.5e-07 0.00021 24.1 0.7 1 23 319 341 319 341 0.99
8 12 7.6e-05 0.035 17.1 1.8 1 23 347 369 347 369 0.99
9 12 9.1e-08 4.2e-05 26.3 2.4 1 23 375 397 375 397 0.99
10 12 4.6e-07 0.00021 24.1 0.9 1 23 403 425 403 425 0.98
11 12 4.6e-07 0.00021 24.1 0.6 1 23 431 453 431 453 0.98
12 12 1.4e-08 6.6e-06 28.8 0.4 1 23 459 482 459 482 0.96

Sequence Information

Coding Sequence
atgGCTGGGAAAATGCTTGAGATGAAAAGTATACTTCTAGCTGATTTCACCGCTGATAGCTGCAGTAGTTTTTCCATAGGGGAAAACAGCAATTCTTCTGACTTTATGCTGACAGAAGAAATGATAAAAAAGGAACCTGAGTTCATAATTGAAGACGAGGAGGAAGGCGagaaaataaggaattttttaaagaaaactaaaattaatgATCAAGACAGGAAAAATTTGAATTGGCACAACTGTATTATTTGCGAGGAAAAGTTTTTAAGTATTGAAGCACTTTCTTCTCATGTTCAAGggcatataaaaaaagaaaaatccgaAACTGAAGGTCGTACCTTAAACCACCGACAAGCCCCAAAAACTCAACTCACTGGATTCACACGAGAAGAGTGCATCAAagattatgtaaaaattaaagtgGATTTGCAAGGAGATCCTacatatacttgcaaattgtgcGCAGATAAACATTTTACCAAGTTAGTTGGTATACAAAATCATATGAGAATCCATCAAAATCCTATTTACAAAGAAAGAAACTGTCATGTGTGTAAGCGATCCTTTTTAAGACGAGACACATTACTAGTTCATCTGAGGACACATACTCAAGAACGGCCGTTTAAATGTGATATTTGCAGGGCAACATTTTCTCACTCTAGTTCCTTAGTATCCCATAAACGAATTCATTCAGGAGAAAAGCCGTTTTCTTGCGATATATGCCAGCAGGTATTTCGCGAATCTGGACAAATGTCGGCTCATCGGAGAACCCACTTCGAGAAAACGCTAAAATGTCCACAATGTGATCAATACTATGCATCTTCCAAGAATTTGCGGGCCCATCTAAGAACACATACCGGTGAAAGGCCTTATAATTGTAACCAATGTGAAAAATCATTCCGGACATCTACTGCACTAACGATGCATATCCGCGTTCATACAGGAGAAAGACCTTATAAATGTTCCAACTGTCCATATGCTACGAAACAATCAGGATCATTAAAGGCTCATATGCGAACACACACTGGTGAAAGGCCATTTAAATGCGATCTTTGTGACCGAGCGTATACAGAAAAGAAACGATTAGTAACTCACTATAGGACCCACACTGGAGAACGGCCTTATAAATGTAACCATTGTGACTCCGCATTCGTTCGAAGTGATAATTTGCGTAGTCATATCAGAACACACACTGGAGAAAAGCCATTTCAATGTGAAGTTTGTAACAAGACATTTGCACAGAAAACTACTCTCAAAGCTCATGAAAAAGTTCATTCTGGGGAAAGACCTTATTCCTGTCCTTTCTGTAATTTGACCTTCCGTCAATCAGGTACATTAGTTACGCATATGCGAGTTCATGATGGTCAGAGACCTTTCCCATGCCAAATTTGTGATAGAACTTTCAGACAGAGTAGCAATCTTCGCCGGCACATCGAGGTAGATCATGGAGAAGTAACAGAGCGGTTATTCTAA
Protein Sequence
MAGKMLEMKSILLADFTADSCSSFSIGENSNSSDFMLTEEMIKKEPEFIIEDEEEGEKIRNFLKKTKINDQDRKNLNWHNCIICEEKFLSIEALSSHVQGHIKKEKSETEGRTLNHRQAPKTQLTGFTREECIKDYVKIKVDLQGDPTYTCKLCADKHFTKLVGIQNHMRIHQNPIYKERNCHVCKRSFLRRDTLLVHLRTHTQERPFKCDICRATFSHSSSLVSHKRIHSGEKPFSCDICQQVFRESGQMSAHRRTHFEKTLKCPQCDQYYASSKNLRAHLRTHTGERPYNCNQCEKSFRTSTALTMHIRVHTGERPYKCSNCPYATKQSGSLKAHMRTHTGERPFKCDLCDRAYTEKKRLVTHYRTHTGERPYKCNHCDSAFVRSDNLRSHIRTHTGEKPFQCEVCNKTFAQKTTLKAHEKVHSGERPYSCPFCNLTFRQSGTLVTHMRVHDGQRPFPCQICDRTFRQSSNLRRHIEVDHGEVTERLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00425042;
90% Identity
iTF_00455594;
80% Identity
iTF_00455594;