Basic Information

Insect: Diarsia brunnea
Gene Symbol: -
Assembly: GCA_949774965.1
Location: OX459011.1:6883584-6885845[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.9e-07 0.00021 22.0 0.0 4 37 16 49 13 56 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.9e-07	0.00021	22.0	0.0	4	37	16	49	13	56	0.85

Sequence Information

Coding Sequence: ATGGCGCCAACTGGGAAAAAACCTCGAGGCCAGTGGTCAGAATGTCAGCTAAAAAATGCCATAAAGGCAGTAAAGAGACGTGAAATGTCACAACGAGCAGCTGCTGAAGCATTTTGTATCCCAAGGCGTACATTGCGAAACCACTTAATATCCGGAAAAACAGAAAAGGTAACTGGTAGACCACCTattctgaataaaaaacatgaacaGGACTTAGCAAAACGGATAATAAGACTTGCTCACGTAGGTATGCCGCTGACCCCCAAACTTGTTCGGAAACAAGCGTACGAGTTCTGTAGAGCAAATGGCATATCAAACATGttcagtgaaaaaacaaatattgcagGGAAGAAATGGCTGAAAGGTTTCCTCAAACGCAATTCGGAGATATCACTTCGTAAAGCTCAGTTTATGAATCCCGGCAGAGCACAAAAACTTAATAAGCACATCGTTCAAAAACACTTTGAAgctgtcaaaaaaatatatagcgagTTGGATATATCAAATCATCCAGAACGTCTATATAATATGGATGAGAAGGGTTGTAGATTGAACCTTCATCATCAGCAGAAAGTTTTTGCTGAAAAAGGTTCAAAAAGAGTGCATTTTATAGCTAATGAACATGCAGAAAATGTGACAATCGCGATGTGTGTGAATGCAACGGGAAATGCAGTGCCTCCAATGATCTTATTCAAGGGCAAAAGATTAAAACCAGAATTTTGtgacaattttcctgctggaagcTTAGTAAAGATGGCACCCAAGGGAAGTATGACGACCGAACTTTTCGTGGACTTCATCGAACATCTGGGTCAGTATAAGTCTCCAGGAAAATgcttattaatttttgatggcGCTTCTTGTCATTTGGATGCCAGGATCGTAGATGCAGCAGATGAACACGACATCATATTATACTGTTTGCCCTCAAACACAACGCACGAGTTACAACCCCTTGATAAGTCAGTTAATAAATCGTACGAGCATCATTGGGATGAGGAGCTATTATTGTACGCATATCAATATCCAGATCGCAAACTTACAAAACAGCGCTTCAGTAAGATTTTTACCAAAGTATGGCCCAGGTGCATGAcccaagaaaatataattaacggATTCAGAGCCACCGGACTCTACCCTTATGATCCCAATGCAATTCCTCAAGAAGCTTACGCGCCTTCAGCGCTTACACAATTACCTGGTATACAACATCAAAACGACTCTCAAATGCAACAAGCTACTGATTTCGGAGATTTAGTGGTCTCCCCACGACGACACAATAACTTTGAGATAGATCATGTCACATACAATGAAGATAACTTGCGAGATTTGTCACCATCGATTTTATCCCAGTTTCAAGATGATCTCCCAGAAAATGAACTTGCAGAAAGAAATATATTAGATATTCCAAAGTGTTCAACTACTACTCGTGGAAAGTTAGTTGACTATAGTTCCTCGTCCGAATCTACCATTGAGGATTCTCAACATCAAGAACAGCATCGTAGACAGCCCCTTTTGAGCATTCCGTACGACAGGAATTCTCAGTTTTTATCACCTATTCCTTCCACCTCCGGTATAAATAGTATGCACCCTCAACGACTGTTAGATTTTTCTACGTCAGACGTGTCCGATCAAGAAGATTTTGatcaaaatatattgaatttcACCCATGCACAATATCCTGgaagaaatattaacatttatacGTCGTCATCTGAGTCGGAAGAAGAAAATATCAACCCACAGTCGAGAGAAAAATACAGTTCATTTGCTAAACGTGATCAGGAAAGATCTGAGGATTCTGATGATAACGTAccactttctaaaattaaagaaacttcAGGCACTTCAGGCGCTAAGACACCATTTCATAAACAAATTCCTACGCCAAATTTCGCAACAATAAAGAATAAACCAAGGCGTAAAGCTTTAAATTATATCGGGCAAAAGGTTACCAAAGACTTATTTGACGCTGCCAAagaaaaaggcttacaaaaacaaaagaaaaaatcaattCCTGTAAAAGGacagctaaaacaaaaaaaaacgaacggtaaatctacagaaaaaaaaaatgctaaaaaacagaaaaaagtggagACTGAAACTGCTGAAAATGAAGTGTGGTTTTGTCAAGCTTGTGAGATGGACAGGGTTGCCGATATGCGTCAATGTAAAGTGTGTTTGGCGTGGTACCATGAGGATTGCGTAGGTTTGACAAAAGAAGACACCGATATTTTCTTATGCCCAATGTGTAACTAA
Protein Sequence: MAPTGKKPRGQWSECQLKNAIKAVKRREMSQRAAAEAFCIPRRTLRNHLISGKTEKVTGRPPILNKKHEQDLAKRIIRLAHVGMPLTPKLVRKQAYEFCRANGISNMFSEKTNIAGKKWLKGFLKRNSEISLRKAQFMNPGRAQKLNKHIVQKHFEAVKKIYSELDISNHPERLYNMDEKGCRLNLHHQQKVFAEKGSKRVHFIANEHAENVTIAMCVNATGNAVPPMILFKGKRLKPEFCDNFPAGSLVKMAPKGSMTTELFVDFIEHLGQYKSPGKCLLIFDGASCHLDARIVDAADEHDIILYCLPSNTTHELQPLDKSVNKSYEHHWDEELLLYAYQYPDRKLTKQRFSKIFTKVWPRCMTQENIINGFRATGLYPYDPNAIPQEAYAPSALTQLPGIQHQNDSQMQQATDFGDLVVSPRRHNNFEIDHVTYNEDNLRDLSPSILSQFQDDLPENELAERNILDIPKCSTTTRGKLVDYSSSSESTIEDSQHQEQHRRQPLLSIPYDRNSQFLSPIPSTSGINSMHPQRLLDFSTSDVSDQEDFDQNILNFTHAQYPGRNINIYTSSSESEEENINPQSREKYSSFAKRDQERSEDSDDNVPLSKIKETSGTSGAKTPFHKQIPTPNFATIKNKPRRKALNYIGQKVTKDLFDAAKEKGLQKQKKKSIPVKGQLKQKKTNGKSTEKKNAKKQKKVETETAENEVWFCQACEMDRVADMRQCKVCLAWYHEDCVGLTKEDTDIFLCPMCN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00933692;
90% Identity: iTF_00445098;
80% Identity: iTF_00445099;