Dbru013390.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diarsia brunnea
Gene Symbol
-
Assembly
GCA_949774965.1
Location
OX459005.1:14031329-14033590[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.9e-07 0.00021 22.0 0.0 4 37 16 49 13 56 0.85

Sequence Information

Coding Sequence
ATGGCGCCAACTGGGAAAAAACCTCGAGGCCAGTGGTCAGAATGTCAGCTAAAAAATGCCATAAAGGCAGTAAAGAGACGTGAAATGTCACAACGAGCAGCTGCTGAAGCATTTTGTATCCCAAGGCGTACATTGCGAAACCACTTAATATCCGGAAAAACAGAAAAGGTAACTGGTAGACCACCTattctgaataaaaaacatgaacaGGACTTAGCAAAACGGATAATAAGACTTGCTCACGTAGGTATGCCGCTGACCCCCAAACTTGTTCGGAAACAAGCGTACGAGTTCTGTAGAGCAAATGGCATATCAAACATGttcagtgaaaaaacaaatattgcagGGAAGAAATGGCTGAAAGGTTTCCTCAAACGCAATTCGGAGATATCACTTCGTAAAGCTCAGTTTATGAATCCCGGCAGAGCACAAAAACTTAATAAGCACATCGTTCAAAAACACTTTGAAgctgtcaaaaaaatatatagcgagTTGGATATATCAAATCATCCAGAACGTCTATATAATATGGATGAGAAGGGTTGTAGATTGAACCTTCATCATCAGCAGAAAGTTTTTGCTGAAAAAGGTTCAAAAAGAGTGCATTTTATAGCTAATGAACATGCAGAAAATGTGACAATCGCGATGTGTGTGAATGCAACGGGAAATGCAGTGCCTCCAATGATCTTATTCAAGGGCAAAAGATTAAAACCAGAATTTTGtgacaattttcctgctggaagcTTAGTAAAGATGGCACCCAAGGGAAGTATGACGACCGAACTTTTCGTGGACTTCATCGAACATCTGGGTCAGTATAAGTCTCCAGGAAAATgcttattaatttttgatggcGCTTCTTGTCATTTGGATGCCAGGATCGTAGATGCAGCAGATGAACACGACATCATATTATACTGTTTGCCCTCAAACACAACGCACGAGTTACAACTCCTTGATAAGTCAGTTAATAAATCGTACGAGCATCATTGGGATGAGGAGCTATTATTGTACGCATATCAATATCCAGATCGCAAACTTACAAAACAGCGCTTCAGTAAGATTTTTACCAAAGTATGGCCCAGGTGCATGAcccaagaaaatataattaacggATTCAGAGCCACCGGACTCTACCCTTATGATCCCAATGCAATTCCTCAAGAAGCTTACGCGCCTTCAGCGCTTACACAATTACCTGGTATACAACATCAAAACGACTCTCAAATGCAACAAGCTACTGATTTCGGAGATTTAGTGGTCTCCCCACGACGACACAATAACTTTGAGATAGATCATGTCACATACAATGAAGATAACTTGCGAGATTTGTCACCATCGATTTTATCCCAGTTTCAAGATGATCTCCCAGAAAATGAACTTGCAGAAAGAAATATATTAGATATTCCAAAGTGTTCAACTACTACTCGTGGAAAGTTAGTTGACTATAGTTCCTCGTCCGAATCTACCATTGAGGATTCTCAACATCAAGAACAGCATCGTAGACAGCCCCTTTTGAGCATTCCGTACGACAGGAATTCTCAGTTTTTATCACCTATTCCTTCCACCTCCGGTATAAATAGTATGCACCCTCAACGACTGTTAGATTTTTCTACGTCAGACGTGTCCGATCAAGAAGATTTTGatcaaaatatattgaatttcACCCATGCACAATATCCTGgaagaaatattaacatttatacGTCGTCATCTGAGTCGGAAGAAGAAAATATCAACCCACAGTCGAGAGAAAAATACAGTTCATTTGCTAAACGTGATCAGGAAAGATCTGAGGATTCTGATGATAACGTAccactttctaaaattaaagaaacttcAGGCACTTCAGGCGCTAAGACACCATTTCATAAACAAATTCCTACGCCAAATTTCGCAACAATAAAGAATAAACCAAGGCGTAAAGCTTTAAATTATATCGGGCAAAAGGTTACCAAAGACTTATTTGACGCTGCCAAagaaaaaggcttacaaaaacaaaagaaaaaatcaattCCTGTAAAAGGacagctaaaacaaaaaaaaacgaacggtaaatctacagaaaaaaaaaatgctaaaaaacagaaaaaagtggagACTGAAACTGCTGAAAATGAAGTGTGGTTTTGTCAAGCTTGTGAGATGGACAGGGTTGCCGATATGCGTCAATGTAAAGTGTGTTTGGCGTGGTACCATGAGGATTGCGTAGGTTTGACAAAAGAAGACACCGATATTTTCTTATGCCCAATGTGTAACTAA
Protein Sequence
MAPTGKKPRGQWSECQLKNAIKAVKRREMSQRAAAEAFCIPRRTLRNHLISGKTEKVTGRPPILNKKHEQDLAKRIIRLAHVGMPLTPKLVRKQAYEFCRANGISNMFSEKTNIAGKKWLKGFLKRNSEISLRKAQFMNPGRAQKLNKHIVQKHFEAVKKIYSELDISNHPERLYNMDEKGCRLNLHHQQKVFAEKGSKRVHFIANEHAENVTIAMCVNATGNAVPPMILFKGKRLKPEFCDNFPAGSLVKMAPKGSMTTELFVDFIEHLGQYKSPGKCLLIFDGASCHLDARIVDAADEHDIILYCLPSNTTHELQLLDKSVNKSYEHHWDEELLLYAYQYPDRKLTKQRFSKIFTKVWPRCMTQENIINGFRATGLYPYDPNAIPQEAYAPSALTQLPGIQHQNDSQMQQATDFGDLVVSPRRHNNFEIDHVTYNEDNLRDLSPSILSQFQDDLPENELAERNILDIPKCSTTTRGKLVDYSSSSESTIEDSQHQEQHRRQPLLSIPYDRNSQFLSPIPSTSGINSMHPQRLLDFSTSDVSDQEDFDQNILNFTHAQYPGRNINIYTSSSESEEENINPQSREKYSSFAKRDQERSEDSDDNVPLSKIKETSGTSGAKTPFHKQIPTPNFATIKNKPRRKALNYIGQKVTKDLFDAAKEKGLQKQKKKSIPVKGQLKQKKTNGKSTEKKNAKKQKKVETETAENEVWFCQACEMDRVADMRQCKVCLAWYHEDCVGLTKEDTDIFLCPMCN