Dall007530.1
Basic Information
- Insect
- Diachasma alloeum
- Gene Symbol
- -
- Assembly
- GCA_001412515.3
- Location
- NW:50857-61202[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0061 0.47 10.5 1.9 1 23 281 303 281 303 0.97 2 19 0.062 4.7 7.3 0.5 1 23 352 374 352 374 0.98 3 19 0.0052 0.39 10.7 0.3 1 19 415 433 415 435 0.95 4 19 0.18 14 5.8 2.1 1 23 448 471 448 471 0.88 5 19 0.045 3.4 7.7 2.3 2 23 477 498 476 498 0.95 6 19 0.98 74 3.5 0.1 3 22 527 546 525 547 0.90 7 19 3.3e-07 2.5e-05 23.9 0.3 2 23 595 617 594 617 0.97 8 19 3.3e-05 0.0025 17.6 0.2 1 23 623 646 623 646 0.94 9 19 5.3e-05 0.004 16.9 1.4 1 23 659 682 659 682 0.96 10 19 3.5e-05 0.0027 17.5 0.9 3 23 692 712 690 712 0.92 11 19 0.074 5.6 7.1 0.0 3 20 771 788 769 788 0.94 12 19 0.00042 0.032 14.1 0.0 2 23 807 828 806 828 0.97 13 19 7.2e-05 0.0054 16.5 0.6 2 23 844 865 843 865 0.96 14 19 7.5e-05 0.0057 16.5 0.3 1 23 886 909 886 909 0.91 15 19 0.046 3.5 7.7 0.3 2 23 972 994 971 994 0.95 16 19 4.1e-05 0.0031 17.3 0.4 2 23 1015 1037 1014 1037 0.95 17 19 0.17 13 5.9 0.5 1 23 1043 1067 1043 1067 0.95 18 19 8.6 6.5e+02 0.6 0.7 1 23 1072 1095 1072 1095 0.75 19 19 0.096 7.3 6.7 0.1 2 23 1125 1147 1125 1147 0.93
Sequence Information
- Coding Sequence
- ATGGACGAAGTCGTCGAGCTGGAGGCACTGGACAATGTGTGCAGACTTTGTCTGTCAACGGACGAGCCCAAGTCACCAATATTCGGCGTCCAAGGGGCAGCTGTACCATTGGCCGAGAAGATTCAAGACTGTCTCAGCATCGAGGTGCTGCGGGACGACAAACTCGGGACGATGATCTGCGGGAGCTGTGTCAAGAGTGTCAATCAGTGGCACTTGTACAGGGATAGCTGTCTCAGGTCCCAGGAGAAGCTGCAGAGATGGGTGGAGAAACGTGGAGATGTTATAACTCACATAAAATCGGAGCCAATCGACCCAGACGAGATGTCCTCCCCAGAGGATCTCATCGATACCATGGACAATATGGACGACATCCCCGAGGACAGATCCCCCCCTCGCTCCAAACGTCGTCGATCATCAAGCCATTCATCAGAAGCGGACTCAGTCGCGGGCACACAGCTCCTGCTGAACCCAATGGCGGCAGCCGCGAAGGACCTCCTGGACCCGACCTCAGGGGACTACCACTCCTCCCGCAAAAAACTAAAGCGCGGTCCCCACACCCACTTCCGCGGTATCAAAGTATTCAAACGTAAGTGCCCCCACTGCATGATCCACTTGCACTCAAAGCTCTCGTACAAGAACCACATGGATCGCTACCACCGCGCAAGCGCCCCAAAGCCGCGAAACGGTCCGCTATCATTCCGCCTCCCCTCGACGGACAAGTCCTCCTCCCTGGACGAGGACATAGAGATGGTGGAGGACGTCGAGGACGAGCTCCTCTCAATGGAGAAGAACGCGCCCCTCACCCAAGTCCAAGAGAACATAATAAGCCAATTAAAGACCTTCTCGTGCTACTCGTGTCAGCAAGTGTTTAGCGATCGCCGCAGCACCCTCAACCACATCCGCCAGCACATGCCAGACTTGCGTCCGTACACGTGTATTGCATGCCTGACCGAGTTCCCAGACCGTTCGATATACAAGCTCCATTGCGGCGCGTCCTTTGAGTGCGCCATGAAAATCGCCCTCGTAGTCCCCAAACACGGCACGGAGAAGTATTTCACGTGCAACATGTGCCTTAGACCAATGCCGAACAGAAAAGAACTGCTGTCCCACCTGTCGAAGCACTCTGACAAGCAGTACGAGCCCCTGACGTCGTCCGCCCCGACGGCGCTCAAATCCCCAAAGACAAAAGAGCGCTCGGCAACGGCCCCGGGGCCCTACCGCCACGGCGACCCAGCGCACAACCACACGTGCGACTACTGCGGCATGATCTATCGCTACAAGCCCAACATGCTCAAGCACGAAGACCTGTGCAAGCGTCTACCGCCGGACGAGCGGACCTCCTACCGCTGCGCCCACTGCGGCATGACATTCCTTGTTTTCAAGAAATTCCAGTCCCACATTACCCTCGAGCACAACCGCAAAGATCTCGTCTGCTACGAGTGCAACTCAAAGTTCAAGCAGTCTAATGAGTACTTGATCCACCACCAGCAGCACAGAAACAGTGCTGTGAGGGACGGGGCGAAGAGCGTCTGGAAGAACTACAACTCGAGCTTGACCAAGGTCACCATGAAGTACGGCTGTGCCATGTGCCCCCAGGAGTTCCTCACTAAGGAGGAGCTGGCACAGCACAGGCCGACGCATTCAAAAACCAAGAGCCAAGCCCAGAATCACGTTGAAGTTATAGATCCCGACGTGGACGACAGCATGAGCCAGTCGGGATCGGAGCTCAATGCATCCGCCTACTCCATCCCCCGGGAGAACAATTCCCACACGAGGAGCACAGAGTGCACCACCTGCGGCAAGATATTCGCCAACTATCCCAACTTGCGGAGGCACATAAGAACGGTGCACATAATCGCAGGTAGGTTCAGTTGTCCCAAGTGCCCGAAGACGTTTACGAGCGAGGATCTGTGGAATCAGCACGCCGAGAGGGCGCACCCGAAGGAGGTGCCCGCCGAGGGAGGGGCGCCCCCTTTCAAGTGTATGCAGTGCAAGAAGGTCTTCGATTCGCAGGAGATGTTGAACAGCCATCTTCAGCAGTCACACGGAATGGCTGAGGACGATCACTTGGCTTGCGACATATGCGGCAAGCGCTTCAGCAACGAGACGTCGCTGAAGATTCACAGAGGGCACCACTTCAGACGTGACTCTAGACTGTCGATTCGGTCGGTGCCCCATCCGCTGGATCAGGTGCAAGTTGAGATGCAGGAGGGGCCGCTGGAGTTGAGCCTGACACCGCGTCCGGCTAAAGCCAAGAAGTCCTTTCCAACGCCGAGTTTCAAGCAGTCTTTGTCACCGAGTAATTTGGCCTGCGCTGTCTGCGACGACTCCTTCTCAGACGTCGGGGAATTGCGGAAGCACCTGTGGGAGGTCCACTGCCAGAAGCACAAGTCCGAGAAGTCCTTTGTCGGAGATCTTCAGTGTGAGCTGTGCACAAACGTCTTTCCGGATGAGAAGGCACTGGAGGAGCACATGAGGTGGCACAAGGAGAATCCGATCTTGGCCGAGGTGACGCGACCCGTCGACATCTCCTGCGACATCTGCGGAAAGTTCTACAGCTCGACAAAAGCCCTGTGGAAGCACAAGAAGCTGCACAAGACGACGCCGGTGGCGGGCATCAAGTTCCAGTCGCTCAAGAAGACGACGCCCACGTCCTTCCCCTGCCCCGTCTGCAAGAAGGTCTTCAACAACGAGACTTCCATGAAGAAGCATAAGGCCGCTGCGCACTACGTGAGGAAGTCGTTGAACTCGATAACCAGGAAGTCGACGACACCGTCCCCCTCCAAGGCCGACGAAGACGGCAAGCCAAAACGACCGAAATTGGACTTTGACATGATCAGGAAGGCGTATCACCTGGGGGAGCCTTCGGGCAGCAGCTTTGGGACACCAACCGCCACGACCAAGAAACCTGTCACCTGCGGCATCTGCAAGAAGCTGCTGCCCAGCATGAGCTCGCTCTACAAGCATCGCCAGAACGTACACAAGAGCAGCATTGGCAAGCCTCTGGAGGTCGACGAGGGCGAGGTCGAGGGCGAGGGGGTCTCCTGCACCGAGTGCTACAAGGTCTTCTCTAACCCTGCCAACATGAAACAGCACTACACCAAGGTTCACGGCAATGGCGACAAGCATTACTGCACCATGGACGACTGCGAGGAAGTCTTTGATACTTCGTTGGCCAAGCAGGCCCACGAGAAGAGCCACATGAACATCCTCTACAGCTGCAATCTGTGCTCTAGGCACATGTTCAATCGCTCCGCCATCGATGGCCATCTCAATAATGAGCACGCCGAAGAGGTCGAGGGGAAGAAGACGGAGATGTTCTACAGGAAAACCGATTTGGGGAGCTATGAGGTCAAGGGCGCTGACGGCAGGGTCTGCCCCATTTGCAAGATCAAGTATCCGAACATCAAGGCTATGAAGATTCATTATGTCAAGATCCATGAGGGCGTCAGTTAG
- Protein Sequence
- MDEVVELEALDNVCRLCLSTDEPKSPIFGVQGAAVPLAEKIQDCLSIEVLRDDKLGTMICGSCVKSVNQWHLYRDSCLRSQEKLQRWVEKRGDVITHIKSEPIDPDEMSSPEDLIDTMDNMDDIPEDRSPPRSKRRRSSSHSSEADSVAGTQLLLNPMAAAAKDLLDPTSGDYHSSRKKLKRGPHTHFRGIKVFKRKCPHCMIHLHSKLSYKNHMDRYHRASAPKPRNGPLSFRLPSTDKSSSLDEDIEMVEDVEDELLSMEKNAPLTQVQENIISQLKTFSCYSCQQVFSDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELLSHLSKHSDKQYEPLTSSAPTALKSPKTKERSATAPGPYRHGDPAHNHTCDYCGMIYRYKPNMLKHEDLCKRLPPDERTSYRCAHCGMTFLVFKKFQSHITLEHNRKDLVCYECNSKFKQSNEYLIHHQQHRNSAVRDGAKSVWKNYNSSLTKVTMKYGCAMCPQEFLTKEELAQHRPTHSKTKSQAQNHVEVIDPDVDDSMSQSGSELNASAYSIPRENNSHTRSTECTTCGKIFANYPNLRRHIRTVHIIAGRFSCPKCPKTFTSEDLWNQHAERAHPKEVPAEGGAPPFKCMQCKKVFDSQEMLNSHLQQSHGMAEDDHLACDICGKRFSNETSLKIHRGHHFRRDSRLSIRSVPHPLDQVQVEMQEGPLELSLTPRPAKAKKSFPTPSFKQSLSPSNLACAVCDDSFSDVGELRKHLWEVHCQKHKSEKSFVGDLQCELCTNVFPDEKALEEHMRWHKENPILAEVTRPVDISCDICGKFYSSTKALWKHKKLHKTTPVAGIKFQSLKKTTPTSFPCPVCKKVFNNETSMKKHKAAAHYVRKSLNSITRKSTTPSPSKADEDGKPKRPKLDFDMIRKAYHLGEPSGSSFGTPTATTKKPVTCGICKKLLPSMSSLYKHRQNVHKSSIGKPLEVDEGEVEGEGVSCTECYKVFSNPANMKQHYTKVHGNGDKHYCTMDDCEEVFDTSLAKQAHEKSHMNILYSCNLCSRHMFNRSAIDGHLNNEHAEEVEGKKTEMFYRKTDLGSYEVKGADGRVCPICKIKYPNIKAMKIHYVKIHEGVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00351346;
- 90% Identity
- iTF_00438927; iTF_01273968; iTF_01273276;
- 80% Identity
- -