Pcon002524.1
Basic Information
- Insect
- Psyttalia concolor
- Gene Symbol
- -
- Assembly
- GCA_030522845.1
- Location
- JAPYZM010000404.1:2322-7016[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.009 1.5 10.5 1.9 1 23 281 303 281 303 0.97 2 18 0.091 15 7.3 0.5 1 23 352 374 352 374 0.98 3 18 0.0076 1.3 10.7 0.3 1 19 413 431 413 433 0.95 4 18 0.16 27 6.5 1.4 1 23 446 469 446 469 0.88 5 18 0.0087 1.4 10.5 2.6 1 23 474 496 474 496 0.97 6 18 0.099 17 7.2 0.1 3 23 525 545 523 545 0.97 7 18 4.9e-07 8.2e-05 23.9 0.3 2 23 593 615 592 615 0.97 8 18 4.8e-05 0.0081 17.6 0.2 1 23 621 644 621 644 0.94 9 18 0.0027 0.45 12.1 0.4 1 23 655 678 655 678 0.95 10 18 5.1e-05 0.0086 17.5 0.9 3 23 688 708 686 708 0.92 11 18 0.11 19 7.0 0.0 3 20 767 784 765 784 0.94 12 18 0.0035 0.59 11.8 0.0 2 23 803 824 802 824 0.97 13 18 0.00011 0.018 16.5 0.6 2 23 840 861 839 861 0.96 14 18 0.00011 0.018 16.5 0.3 1 23 882 905 882 905 0.91 15 18 0.067 11 7.7 0.3 2 23 968 990 967 990 0.95 16 18 0.00011 0.019 16.5 0.2 2 23 1011 1033 1010 1033 0.94 17 18 0.11 19 7.0 0.6 1 23 1039 1063 1039 1063 0.96 18 18 0.14 24 6.7 0.1 2 23 1121 1143 1121 1143 0.93
Sequence Information
- Coding Sequence
- ATGGACGAAGTCGTTGAGCTGGAGGCACTGGACAATGTCTGTCGACTTTGTCTGTCAACGGACGAGCCCAAATCACCAATATTCGGCGTCCAAGGGGCAGCTGTACCATTGGCCGAGAAGATTCAAGACTGTCTGAGCATTGAGGTGCTACGCGATGATAAACTTGGAACCCTCATTTGTGGGAGCTGCGTTAGGAGTGTTAATCAGTGGCACACGTACAGGGACTCCTGCCTGAGGTCCCAGGAGAAGCTGCAGAGATGGGTGGAGAAGCGTGGAGATGTTGTGACTCACATAAAATCGGAGCCAATCGACCCAGACGACGAGTCCTCCCCGGAGGATCTCATGGACACCATGGACAATCTGGAAGATATGCCGGAGAACACTTCACCCCCTCGTTCCAAACGTCGTCGATCATCAAGCCATTCTTCAGAAGCCGACTCAACCGCTGGAACGGAGCTCCTCCTAAACCCAATGGCAGCAGCTGCGAAGGACTTGCTGGACCCCACATCAGTGGACTACCACTCGACgcgcaaaaaattaaaacgcgGTCCCCACACCCACTTCCGCGGTGTCAAAGTATTCAAACGTAAGTGTCCCCACTGCATGATCCACCTGCACTCAAAGCTCTCGTACAAGAATCACATGGAGCGCTACCACCGCTCCACGAGTGCTCAAAAATCGCGTAACGGTCCACTCTCCTTCCGGCTTCCCTCCGACAAATCCTCCTCAATGGACGAGGACATAGAAATGGTGGAGGACGTTGAGGACGAGCTCCTCTCAATGGAGAAAAATGCGCCCCTCACTCAGGTCCAAGAGAACATAATAAGCCAACTAAAAACCTTCTCCTGCTACTCGTGTCAGCAGGTATTTAGCGATCGTCGTAGCACCCTGAACCACATTCGCCAGCACATGCCGGACTTGCGTCCCTACACGTGCATTGCATGCCTGACAGAATTCCCCGACCGTTCGATATACAAGCTCCACTGCGGCGCATCCTTCGAGTGCGCCATGAAAATTGCCCTTGTCGTACCAAAACACGGCACGGAGAAGTACTTCACGTGCAACATGTGCCTTAGACCAATGCCGAATCGTAAAGAACTGTTGTCCCACTTGTCAAAGCACTCCGACAAGCAGTACGAACCGCTGCCCGCAGCGGCCCCAGTCAAATCCCCAAAGATAAAAGAGCGTTCAATAACGGCACCCGGCCCCTACCGCCAGGGCGACCCCGCGCACAATCACACCTGCGACTACTGCGGCATGATCTACCGTTACAAGCCCAACATGCTCAAGCACGAAGACCTCTGCAAGCGTCTGCCACCCGACGAGCGAACCTCCTACCGCTGCGCCCACTGTGGCATGACATTCTTAGTCTTCAAGAAATTCCAATCCCACATTGCCCTTGAGCACAACAAAAAGGACTTCGTCTGCTACGAGTGCAACGCGAAATTCAAGCAGTCCAATGAGTACTTGATCCATCATCAACAGCACCGAAACAGTTCGTCTAGGGAGAGTGTGAAGAGTGTCTGGAAGAACTACAACTCAAGTCTGACCAAGGTCACCATGAAGTATGGCTGTGCAGTCTGTCCGGAGGAGTTCCTCACCAAGGAGGAACTTGTCCAGCACAGAACAACGCACGCCAAGTCTAAGAGCCAAGCGCAGAATCATGTGGAGGTTATTGATCCTGACATGGAGGACACCTTGAGCCAATCGGGCTCGGAGATGAATGCCTCGGGTTACGCCATGCCCTTGGAGAACAACTCCCACGGGAGGAGCACCGAGTGCACCACCTGCGGAAAGATCTTCGCCAACTATCCGAACCTAAGGAGGCACATAAGAACGGTACACATCGTGGCAGGTAGATTCAGTTGTCCAAAGTGCCCGAAAACGTTTACCAGTGAGGACCTGTGGAACCAGCACGCGGAGCGTGCGCACCCGAAGGAGGTGCCCGTGGAAGGGGGTAACTTTAAATGTCTGCAGTGCAAGAAGGTCTTCGACTCGCAGGAGATCTTGAACAGCCATCTCCAGGAGGCGCACGGAATGGCAGAGGACGATCATCTGGCCTGCGACATATGCGGCAAACGCTTTAGTAATGAGACCTCTCTGAAGATCCATCGTGGGCATCATTTCCGACGTGACTCCAGACTCTCCATTCGATCGGTGCCCCATCCCCTGGATCAGGTGCAAGTGGAGATGGAGGAGGGCCCGACGGAGTTGAGTTTGACTCCGCGTCCGGCTAAAGCCAAGAAGTCCTTCCCAACGCCGACCTTCAAGCAGTCACTCTCCCCGGGCAATTTGGCATGCGCCGTCTGCGACGACTCCTTCTCAGACGTCGCTGAACTCAGAAAACACCTGTGGGAGGTCCACTGTCAGAAGCACAAGTCGGAGAAGTCCTTTGTCGAGGATCTGCAGTGTGAATTGTGCACAAATGTCTTTCCAGATGAGAAGGCTCTAGATGAGCACATGAGGTGGCACAAGGAGAACCCAATTTTAGCTGAGGTGACGAGACCCGTGGACATCTCCTGCGATATTTGCGGCAAATTCTACAGCTCGACAAAGGCACTGTGGAAGCACAAGAAGTTGCATAAAACGACGCCGGTTACGGGAATGAAGCTGCAGTCGCTTAAGAAGACGACGCCGACGTCCTTCCCCTGTCCTGTATGCAAGAAGGTATTCAATAATGAGACTTCAATGAAGAAACACAAGGCAGCTGCTCACTATGTGAGGAAATCGTTGAACTCGATAGCCAGGAAGTCTACGACACCGTCGCCCACGAAAGTCGATGAGGATGGCAAGCCTAAACGACCGAAGCTGGACTTTGATATTATTAGAAAGGCGTATCATCTtggggagccttctggcagCAGCTTTGGAACACCCACTGCAACGACCAAGAAGCCTGTCACCTGCGGCATCTGCAAGAAACTTCTGCCCAGCATGAGTTCGCTTTACAAGCATCGTCAGAATGTCCACAAGAGCAGCATTGGCAAGCCTTTGGAGGTGGACGAGGGCGAGGTCGACGGCGAGGGGGTGCCCTGCAGCGAGTGCTATAAGGTCTTCTCCAATGCTGCCAATATGAAGCAACACTACACGAAGGTCCACGGCAATGGTGACAAGCACTACTGCACGATGGACGACTGCGAGGAGGTCTTCGATACCTCGTTGGCCAAACAAGCGCACGAGAAGACCCACATGAACATCTTGTACAGCTGCAATCTCTGCTCGAGGCACATGTTCAATCGCTCTGCCATTGATGGGCATCTCACTAATGAGCATGGCGAAGAGGTCGAGGGGAAGAAGACTGAGCTCTTCTACAGGAAAACTGATTTGGGAAGCTATGAGGTCAAGGGGGCTGATGGCAGGGTCTGCCCCATTTGCAAGATCAAGTATCCGAATATTAAGGCTATGAAGATTCACTATGTCAAGATCCATGAGGGTGTCAGTTAG
- Protein Sequence
- MDEVVELEALDNVCRLCLSTDEPKSPIFGVQGAAVPLAEKIQDCLSIEVLRDDKLGTLICGSCVRSVNQWHTYRDSCLRSQEKLQRWVEKRGDVVTHIKSEPIDPDDESSPEDLMDTMDNLEDMPENTSPPRSKRRRSSSHSSEADSTAGTELLLNPMAAAAKDLLDPTSVDYHSTRKKLKRGPHTHFRGVKVFKRKCPHCMIHLHSKLSYKNHMERYHRSTSAQKSRNGPLSFRLPSDKSSSMDEDIEMVEDVEDELLSMEKNAPLTQVQENIISQLKTFSCYSCQQVFSDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELLSHLSKHSDKQYEPLPAAAPVKSPKIKERSITAPGPYRQGDPAHNHTCDYCGMIYRYKPNMLKHEDLCKRLPPDERTSYRCAHCGMTFLVFKKFQSHIALEHNKKDFVCYECNAKFKQSNEYLIHHQQHRNSSSRESVKSVWKNYNSSLTKVTMKYGCAVCPEEFLTKEELVQHRTTHAKSKSQAQNHVEVIDPDMEDTLSQSGSEMNASGYAMPLENNSHGRSTECTTCGKIFANYPNLRRHIRTVHIVAGRFSCPKCPKTFTSEDLWNQHAERAHPKEVPVEGGNFKCLQCKKVFDSQEILNSHLQEAHGMAEDDHLACDICGKRFSNETSLKIHRGHHFRRDSRLSIRSVPHPLDQVQVEMEEGPTELSLTPRPAKAKKSFPTPTFKQSLSPGNLACAVCDDSFSDVAELRKHLWEVHCQKHKSEKSFVEDLQCELCTNVFPDEKALDEHMRWHKENPILAEVTRPVDISCDICGKFYSSTKALWKHKKLHKTTPVTGMKLQSLKKTTPTSFPCPVCKKVFNNETSMKKHKAAAHYVRKSLNSIARKSTTPSPTKVDEDGKPKRPKLDFDIIRKAYHLGEPSGSSFGTPTATTKKPVTCGICKKLLPSMSSLYKHRQNVHKSSIGKPLEVDEGEVDGEGVPCSECYKVFSNAANMKQHYTKVHGNGDKHYCTMDDCEEVFDTSLAKQAHEKTHMNILYSCNLCSRHMFNRSAIDGHLTNEHGEEVEGKKTELFYRKTDLGSYEVKGADGRVCPICKIKYPNIKAMKIHYVKIHEGVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00351346;
- 90% Identity
- iTF_00438264;
- 80% Identity
- -