Plou007181.1
Basic Information
- Insect
- Psyttalia lounsburyi
- Gene Symbol
- -
- Assembly
- GCA_030522865.1
- Location
- JAPYZN010002017.1:1-4050[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0078 1.3 10.6 1.9 1 23 187 209 187 209 0.97 2 18 0.079 13 7.4 0.5 1 23 258 280 258 280 0.98 3 18 0.0066 1.1 10.8 0.3 1 19 319 337 319 339 0.95 4 18 0.14 24 6.6 1.4 1 23 352 375 352 375 0.88 5 18 0.0075 1.3 10.6 2.6 1 23 380 402 380 402 0.97 6 18 0.2 33 6.2 0.1 3 23 431 451 429 451 0.96 7 18 4.2e-07 7.1e-05 24.0 0.3 2 23 499 521 498 521 0.97 8 18 4.2e-05 0.007 17.7 0.2 1 23 527 550 527 550 0.94 9 18 0.0023 0.39 12.2 0.4 1 23 561 584 561 584 0.95 10 18 4.5e-05 0.0075 17.6 0.9 3 23 594 614 592 614 0.92 11 18 0.1 17 7.1 0.0 3 20 673 690 671 690 0.94 12 18 0.003 0.51 11.9 0.0 2 23 709 730 708 730 0.97 13 18 9.1e-05 0.015 16.7 0.6 2 23 746 767 745 767 0.96 14 18 9.6e-05 0.016 16.6 0.3 1 23 788 811 788 811 0.91 15 18 0.059 9.8 7.8 0.3 2 23 874 896 873 896 0.95 16 18 9.7e-05 0.016 16.6 0.2 2 23 917 939 916 939 0.94 17 18 0.099 17 7.1 0.6 1 23 945 969 945 969 0.96 18 18 0.12 20 6.8 0.1 2 23 1027 1049 1027 1049 0.93
Sequence Information
- Coding Sequence
- GTGACTCACATAAAATCGGAGCCAATCGACCCAGACGACGAGTCCTCCCCGGAGGATCTCATGGACACCATGGACAATCTGGAAGATATACCGGAGAACACTTCACCCCCTCGTTCCAAACGTCGTCGATCATCAAGCCATTCTTCAGAAGCCGACTCAACCGCTGGAACGGAGCTCCTCCTAAACCCAATGGCAGCAGCAGCGAAAGACCTGCTGGACCCCACATCAGTGGACTACCACACGACgcgcaaaaaattaaaacgcgGTCCCCACACCCACTTCCGCGGTGTCAAAGTATTCAAACGTAAGTGTCCCCACTGCATGATCCACTTGCACTCAAAGCTCTCGTACAAGAATCACATGGAGCGCTACCACCGCTCCACGAGTGCTCAAAAATCGCGTAACGGTCCACTCTCCTTCCGCCTTCCCTCCGAAAAATCCTCCTCAATGGACGAGGACATAGAAATGGTGGAGGACGTTGAGGACGAGCTCCTGTCAATGGAGAAAAATGCGCCCCTCACTCAGGTCCAAGAGAACATAATAAGCCAACTAAAAACCTTCTCCTGCTACTCGTGTCAGCAGGTATTTAGCGATCGTCGTAGCACCCTGAACCACATTCGCCAGCACATGCCGGACTTGCGTCCCTACACGTGCATTGCATGCCTGACTGAATTCCCCGACCGTTCGATATACAAGCTCCACTGCGGGGCATCCTTCGAGTGCGCCATGAAAATCGCCCTTGTCGTACCAAAACACGGCACGGAGAAGTACTTCACGTGTAACATGTGCCTTAGACCAATGCCAAATCGTAAAGAACTGTTGTCCCACTTGTCAAAGCACTCCGACAAGCAGTACGAACCGCTGCCCGCAGCGGCCCCCGTCAAATCCCCAAAGATAAAACCGCGTTCAATAACGGCCCCAGGCCCCTACCGCCAGGGCGACCCCGCGCACAATCACACCTGCGACTACTGCGGCATGATCTACCGTTACAAGCCCAACATGCTCAAGCACGAAGACCTCTGCAAACGTCTGCCACCCGACGAGCGAACCTCCTACCGCTGCGCCCACTGTGGCATGACATTCTTAGTCTTCAAGAAATTCCAGTCCCACATTGCCCTTGAGCACAACAAAAAGGACTTCGTCTGCTACGAGTGCAACGCGAAATTCAAGCAGTCCAATGAGTACTTGATCCACCATCAACAGCACCGAAACAGTTCGTCTAGGGAGAGTGCGAAGAGTGTCTGGAAGAACTACAACTCAAGTCTGACCAAGGTCACCATGAAGTATGGCTGTGCTGTCTGTCCGGAGGAGTTCCTCACCAAAGAGGAACTTGTCCAGCACAGAACATCGCACGCCAAGTCTAAGAGCCAAGCGCAAAATCATGTGGAGGTTATTGATCCTGACATGGAGGACACCTTGAGCCAATCGGGCTCGGAGATGAATGCCTCGGGTTACGCCATGCCCTTGGAGAACAACTCCCACGGGAGGAGCACCGAGTGCACCACCTGCGGAAAGATCTTCGCCAACTATCCGAACCTGAGGAGGCACATAAGAACGGTACACATTGTGGCAGGTAGATTCAGTTGTCCAAAGTGCCCGAAGACGTTTACCAGTGAGGACCTGTGGAACCAGCACGCGGAGCGTGCGCATCCGAAGGAGGTGCCCGTGGAAGGGGGTAACTTTAAATGTCTGCAGTGCAAGAAGGTCTTCGACTCGCAGGAGATCTTGAACAGCCATCTCCAGGAGGCGCACGGAATGGCAGAGGATGATCATCTGGCCTGCGACATATGCGGCAAACGCTTCAGTAATGAGACCTCTCTGAAGATCCACCGTGGACATCATTTCCGACGTGACTCCAGACTCTCCATTCGATCGGTGCCCCATCCCCTGGATCAGGTGCAAGTGGAGATGGAGGAGGGCCCGATGGAGTTGAGCTTGACTCCGCGTCCGGCTAAAGCCAAGAAGTCCTTCCCAACGCCAACCTTCAAGCAGTCGCTCTCCCCGGGCCATTTGGCATGCGCCGTCTGCGATGACTCCTTCTCAGACGTCGCTGAACTCAGGAAACACCTGTGGGAGGTCCACTGCCAGAAGCACAAGTCGGAGAAGTCCTTTGTCGAGGATCTGCAGTGTGAATTGTGCACAAATGTCTTTCCAGATGAGAAGGCTCTAGATGAGCACATGAGGTGGCACAAGGAGAATCCAATTTTAGCTGAGGTGACGAGACCCGTGGACATCTCCTGCGACATTTGCGGCAAATTCTACAGCTCGACAAAGGCACTGTGGAAGCACAAAAAGTTGCATAAAACGACGCCCGTTACGGGAATGAAGCTGCAGTCGCTTAAGAAGACGACGCCTACGTCCTTCCCCTGTCCTGTATGCAAGAAGGTATTCAATAATGAGACTTCAATGAAGAAGCACAAGGCAGCTGCTCACTACGTGAGGAAATCGTTGAACTCGATAGCCAGGAAGTCTACGACACCGTCGCCCACGAAAGTTGATGAGGATGGCAAGCCTAAACGACCGAAGCTGGACTTTGATATTATTAGAAAGGCGTATCATCTTGGGGAGCCTTCTGGCAGCAGCTTTGGAACACCCACTGCAACGACCAAGAAGCCTGTCACCTGCGGCATCTGCAAGAAACTTCTGCCCAGCATGAGTTCGCTTTACAAGCATCGTCAGAATGTCCACAAGAGCAGCATTGGCAAGCCTTTGGAGGTGGACGAGGGCGAGGTCGACGGCGAGGGGGTGCCCTGCAGCGAGTGCTATAAGGTCTTCTCCAATGCTGCCAATATGAAGCAACACTACACGAAGGTCCACGGCAATGGTGACAAGCACTACTGCACGATGGACGACTGCGAGGAGGTCTTCGATACCTCGTTGGCCAAACAAGCGCACGAGAAGACCCACATGAACATCTTGTACAGCTGCAATCTCTGCTCGAGGCACATGTTCAATCGCTCCGCCATTGATGGCCATCTCACTAATGAGCATGGCGAGGAGGTCGAGGGGAAGAAGACTGAGCTCTTCTACAGGAAAACTGATTTGGGAAGCTATGAGGTCAAGGGGGCTGATGGCAGGGTCTGTCCCATTTGCAAGATCAAGTATCCGAATATTAAGGCTATGAAAATTCACTATGTCAAGATCCATGAGGGTGTCAGTTAG
- Protein Sequence
- VTHIKSEPIDPDDESSPEDLMDTMDNLEDIPENTSPPRSKRRRSSSHSSEADSTAGTELLLNPMAAAAKDLLDPTSVDYHTTRKKLKRGPHTHFRGVKVFKRKCPHCMIHLHSKLSYKNHMERYHRSTSAQKSRNGPLSFRLPSEKSSSMDEDIEMVEDVEDELLSMEKNAPLTQVQENIISQLKTFSCYSCQQVFSDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELLSHLSKHSDKQYEPLPAAAPVKSPKIKPRSITAPGPYRQGDPAHNHTCDYCGMIYRYKPNMLKHEDLCKRLPPDERTSYRCAHCGMTFLVFKKFQSHIALEHNKKDFVCYECNAKFKQSNEYLIHHQQHRNSSSRESAKSVWKNYNSSLTKVTMKYGCAVCPEEFLTKEELVQHRTSHAKSKSQAQNHVEVIDPDMEDTLSQSGSEMNASGYAMPLENNSHGRSTECTTCGKIFANYPNLRRHIRTVHIVAGRFSCPKCPKTFTSEDLWNQHAERAHPKEVPVEGGNFKCLQCKKVFDSQEILNSHLQEAHGMAEDDHLACDICGKRFSNETSLKIHRGHHFRRDSRLSIRSVPHPLDQVQVEMEEGPMELSLTPRPAKAKKSFPTPTFKQSLSPGHLACAVCDDSFSDVAELRKHLWEVHCQKHKSEKSFVEDLQCELCTNVFPDEKALDEHMRWHKENPILAEVTRPVDISCDICGKFYSSTKALWKHKKLHKTTPVTGMKLQSLKKTTPTSFPCPVCKKVFNNETSMKKHKAAAHYVRKSLNSIARKSTTPSPTKVDEDGKPKRPKLDFDIIRKAYHLGEPSGSSFGTPTATTKKPVTCGICKKLLPSMSSLYKHRQNVHKSSIGKPLEVDEGEVDGEGVPCSECYKVFSNAANMKQHYTKVHGNGDKHYCTMDDCEEVFDTSLAKQAHEKTHMNILYSCNLCSRHMFNRSAIDGHLTNEHGEEVEGKKTELFYRKTDLGSYEVKGADGRVCPICKIKYPNIKAMKIHYVKIHEGVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00351346;
- 90% Identity
- iTF_00438264;
- 80% Identity
- -