Dall001910.1
Basic Information
- Insect
- Diachasma alloeum
- Gene Symbol
- -
- Assembly
- GCA_001412515.3
- Location
- NW:386829-397532[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.011 0.83 9.7 2.9 1 23 370 392 370 392 0.97 2 19 0.011 0.81 9.7 0.5 2 23 427 448 426 448 0.96 3 19 0.0004 0.03 14.2 4.0 1 23 505 527 505 527 0.96 4 19 0.00058 0.044 13.7 0.7 2 23 534 555 533 555 0.97 5 19 0.0021 0.16 11.9 1.7 2 23 594 615 593 615 0.96 6 19 0.00019 0.014 15.2 4.1 1 23 620 642 620 642 0.96 7 19 0.0012 0.093 12.7 0.5 1 21 648 668 648 672 0.92 8 19 9.8e-05 0.0074 16.1 1.8 2 23 739 760 738 760 0.95 9 19 0.00014 0.01 15.7 5.0 1 23 812 834 812 834 0.97 10 19 0.00019 0.015 15.2 0.7 1 20 839 858 839 860 0.94 11 19 0.034 2.6 8.1 0.3 2 23 871 892 871 892 0.97 12 19 2e-05 0.0015 18.3 0.6 2 23 931 952 930 952 0.97 13 19 1.8e-05 0.0014 18.4 1.6 1 23 957 979 957 979 0.95 14 19 0.00011 0.0083 16.0 1.2 1 23 985 1007 985 1007 0.98 15 19 5.5e-06 0.00041 20.1 0.4 1 23 1024 1046 1024 1046 0.95 16 19 1e-06 7.7e-05 22.4 0.3 1 23 1052 1074 1052 1074 0.99 17 19 8.9e-05 0.0067 16.2 0.4 1 23 1080 1102 1080 1102 0.98 18 19 0.0001 0.0079 16.0 4.1 1 23 1108 1130 1108 1130 0.96 19 19 0.0074 0.56 10.2 0.4 1 20 1136 1155 1136 1157 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGGTATTGATACGTCGGAGCCGTCACAGGACGATGAGCCTGTTGAATCGGCGGTGGGAATATGTCGGGTTTGTTTACACGGCAACTTGATGATGAGAGATTTGTTTGGAGATGGTGAGGTTGTCTCGCTGTCCAGCAAGGCCATGAGCTTCGCCAGTGTTAAGATGATCCAAGGAGACGGTCTCCCCTGCCAAGTCTGCTGCGACTGTGCGGAGAAGCTCGAGTCCGCCTACGAGTTCAAACTCCAGGTGGAGCAGGCCGACAGCGTCCTCCACGAGCGATACGACGGTCTGAACATAAAAGAAGAGCTCTTCTTCAACGAGGTTGAGGTTCACTTGGAGAACGATCGTCACGATGAAGTCGCAGAGATGGACGTTGACGCCCAATACGACGCAGCATCAGAGGCCCTGAACGTCTCTGACCCCGAGAAGTCAACCCTCCTGAAGGACCACCTGGCGCTCCTCGAGGTAGAGAAGCTCGCCGAGCGAGATCACGTCCTGAGCCACTCGGAAATGATCCAGGAGGCCTCCCACCCTCCTCAACTCACCCACCACCGGATCCAAGAATCCCCCCTCAAGGAGCCACTCCTCCAATCCCAAGAGGACTACCTCGACGAGCCCTCTGAGCCCTCCACCCACGAGATCCTCATGTCCCCTGACGATGAATGCCACATAAAGGCGGAAGGCCTTAACCCAGGGGAAATGACCATCGACGAGCACAACTACATGGTCCAGCAGGGCTACACTCTGACGAACGAGCAGGAGCAGCAACTAATGCAACAGGATAACGACGACAATGGCTCCCAGGACTTCCCCACTTTAATGCTGGAGGATGAAGACCCTGAGGAGGCTGAAGCTGCTGAGAATGAGGCTCAGGAGCAAGAGCAGGAGCTGCACGAAGAACTAGAGCAGCCCGAAATCGCCCTTGACCCCAAGCCCCAAGAGACTGAACCCCTCGAGGTAGAGCCCTTGCCCTCGAAAGCCAAAAGATCTCGAAAAGATTCAGACCAAAACTCCTCGGAAGACAATTACTTTGAGAATCTCAACCTGAGCAGTAGACTGAAGCAGTTCGACGATGAAAAATCAGACAAAATATTCTTCATGTGTTACTTCTGCGATAAGCAATTCGTGTCGAAAGTGATATTAAAAGAGCACATGCATTCTCACGAAGAAGTTCGTAAGACACTGTCTCTGAAGAAGACCCCGGAGAAGGCTCAGAAGCCCCACACACCCACTGTGAAGTCCCAACCATCGGGGAAGAAGGCGAATAAGTGCCCCTACTGTGGTAAAGAGTACCTCTACGTGATTTCCTTCAACAAGCACATCAAGCAGCACGAGAAGAACGAAGACGAATTGAAGCAAGAGTCAAACGTCGAGGACTCGGACTCCGAGGGCTTCGACAATACCGACACCTTCGAGGTGATTCACGACGATAGATCAGAGACTCCTGACGATTCGGATCGTCCAGTGAAGACCGAAGGATCAGACTTGACTCAGGAGATCTTCCCCTGCGCCAAGTGCCACGAGAAATTCCCATCAAAGACAGACCTCCAACGTCACACTCTCCACCACAATCAGACAGAAACAGACAGATGTAACATCTGCTCCTTGGAGTTCGAGTCGTCAGAAAAGCTGAAGGAGCATCGTTCCACACACGTGATGGAGGGCGTCCTCTCCGAGCAAGATCTTCGTGACGAACTGTCCAACATCTGTGCGAAAGAGTACGAAGAGAAGTCTCTGGGCAGACTGGACCCCGACGACAAGGACCTGAAGTGTCGAAGCTGCTCCATGACCTTCATGTCGAAGAAGCTTCTGATAAAACACATGGATTCCCACGAGCGCACCAAGTACAGGTGCAAACTCTGCACCCAAGAGTTCACGAAGAAGGATCATTTGAGAAAGCACGCTGAGCAGCACTCGAGGGTAAAGTCCTTCAAGTGCACGCAGTGCAGTAAAGTCTTCGGTAATGAACTCACCCTGCGAAACCATCTGATTGCCACTAATCACAAGACGATACATCAGGGTGAGGAGTACGATCCGAACAAGAGGATAAAAAGAGTGGCTGCCAAGGCTGCTCAGAAGATAATCGACAAAATAAAAACCGAGGATGGATTGGAGGACTCTGATCAGGAGGATGGCGAAGATTTTCGGGAGGACCAGAAGTCCAACGACAAGTCGTCAAAAAGAACGAACCGAAGAGACTTGGAATGCGCCACGTGTGGGAAGAGATGCAGCTCCAAGCAGTACCTGCTGCGACACATGGAGCTGCACTCGAAGGACGAAAAGCCGGACTCGAATCAGTTGAAGGTTAAGCAGAACGATCTGGGCTCGATGCAGAGAACCTGTGGAGTCGGTTTCCCCAGGGATTTTGACGACAACTCTGACGACGACTTTGAGAGTGGCTTGGACTGGCCGATGGACACTCATGAGTGCACAACCTGCAAGAAGCGTTACAGCACGAAGAAGTCGTTGCTGAGACATCAGCTACTGCACGAGGAACCCAACTTTGAATGTGACATCTGCAACGTGAAGTTCTACAGGAAGGACAAGCTCAAGGCCCACTACGACAAGTGTTCTGAGAAGAATCCAGACCAAGTGAGGAAGTGCAACATCTGTGGTGACACCTTCGAGAACAACGAGATCCTGAAGGAGCATCGGGCTAAGCACGTGGACGAGGGGATTCTGACTGAAGAGGACCTGAGGGAGCTGGAGCCCAGCACTGAGGATCGCAAGTCAGGGGAGAAGATCGCGAGAAAACGAAGGACAGATATCGTCGGGCTAGAATGCACAGAATGCAACAAGCAGTACACCTCCAGAAAAGGATTGCTAAGGCACATTCAGGTGCACGAGGGGAAGAAGTATCTCTGCGACATCTGCCCCAAGAAGTTCTACAGAAGGGAACACCTGAAGATTCACGTGGCTAAGCACAACATGGTGAAGCCTTACAAGTGCACGAGGTGCTCCAAGCGATTCATCAAGGAGGAGCAGTTGGCTGCGCACTTGACTAAACACGAGAGAACCTTCAAGAAGAACAAGGAGACTGACTCCACGTCGAAGAGGTTCCTCTGCGAAATATGCTCCAAGAGTTTTACGCAGTCGACAACCCTGGTAGCTCATCTCAGAGCGCATAATGGGATTAAACCTTATGTGTGTGAGGTTTGTGCAAGGCCTTTCACAACGAATGCATATTTGAAGATGCATATGAGAACGCACACTCAGGAGAGGCCCTACAGCTGTCAGTTCTGCTCGAGGGCCTTCGCCAGGGCTGACACTCTGGCTAATCATCTCACTTCTCATACTGGAGAGGCCAAGTACCACTGTAAATACTGTCCCAAGAACTTCAGGAGGCTGAAGTCGCTGAAGGAACATGTGTTCATTCACACTGGGCAGAGACCCTATGCCTGTCCCACGTGCGATCGGAGGTTCAATAATAATGGGAGCAGGTATGCACACTCGAAGAGGTGTAAACAGAATCTCCTGCAGAACCAAGGAAGACAGGGCCAGGCCCAGGGGCAGGCGCAGGGGCAGGCGCAGGCGCAGATGCAAGTACAAAGTCAGGAGATTCAGGCGGTTGTGATTGATAATCAAGGGGTGCAGGAGATTCACGAAGTCCAGCAGGTTCAGACTGTCCAGCAGGTGCAGCAAGTCCAACAAGTGCAGATTCAACAGCAGAATCAGGCGCAGACCATCAGGTTGGGCCCCACCATGGGACCCACCATGCAGGTTGTGCAGAACAAGAATATCAAGACGATTACCATCACCAGGCAGCCGGATCAGGTGGGGCACCAGGTCATTCAGCATCAGGAGATTCTTATGCCGTTGATCCTGCCTCTGACGGTTACACTGACTGATGTGGATGATGAGGTGATACTGCCTGAGGGGACGAAGATTTTTACGACTACGTAG
- Protein Sequence
- MDAVGIDTSEPSQDDEPVESAVGICRVCLHGNLMMRDLFGDGEVVSLSSKAMSFASVKMIQGDGLPCQVCCDCAEKLESAYEFKLQVEQADSVLHERYDGLNIKEELFFNEVEVHLENDRHDEVAEMDVDAQYDAASEALNVSDPEKSTLLKDHLALLEVEKLAERDHVLSHSEMIQEASHPPQLTHHRIQESPLKEPLLQSQEDYLDEPSEPSTHEILMSPDDECHIKAEGLNPGEMTIDEHNYMVQQGYTLTNEQEQQLMQQDNDDNGSQDFPTLMLEDEDPEEAEAAENEAQEQEQELHEELEQPEIALDPKPQETEPLEVEPLPSKAKRSRKDSDQNSSEDNYFENLNLSSRLKQFDDEKSDKIFFMCYFCDKQFVSKVILKEHMHSHEEVRKTLSLKKTPEKAQKPHTPTVKSQPSGKKANKCPYCGKEYLYVISFNKHIKQHEKNEDELKQESNVEDSDSEGFDNTDTFEVIHDDRSETPDDSDRPVKTEGSDLTQEIFPCAKCHEKFPSKTDLQRHTLHHNQTETDRCNICSLEFESSEKLKEHRSTHVMEGVLSEQDLRDELSNICAKEYEEKSLGRLDPDDKDLKCRSCSMTFMSKKLLIKHMDSHERTKYRCKLCTQEFTKKDHLRKHAEQHSRVKSFKCTQCSKVFGNELTLRNHLIATNHKTIHQGEEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDSDQEDGEDFREDQKSNDKSSKRTNRRDLECATCGKRCSSKQYLLRHMELHSKDEKPDSNQLKVKQNDLGSMQRTCGVGFPRDFDDNSDDDFESGLDWPMDTHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILKEHRAKHVDEGILTEEDLRELEPSTEDRKSGEKIARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCSKRFIKEEQLAAHLTKHERTFKKNKETDSTSKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQFCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQGRQGQAQGQAQGQAQAQMQVQSQEIQAVVIDNQGVQEIHEVQQVQTVQQVQQVQQVQIQQQNQAQTIRLGPTMGPTMQVVQNKNIKTITITRQPDQVGHQVIQHQEILMPLILPLTVTLTDVDDEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438917; iTF_00728794; iTF_00351331; iTF_01273958; iTF_01273254;
- 90% Identity
- -
- 80% Identity
- -