Plou005036.1
Basic Information
- Insect
- Psyttalia lounsburyi
- Gene Symbol
- -
- Assembly
- GCA_030522865.1
- Location
- JAPYZN010001026.1:19632-24197[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0046 0.77 11.3 2.3 1 23 376 398 376 398 0.97 2 19 0.015 2.5 9.7 0.5 2 23 434 455 433 455 0.96 3 19 0.00012 0.02 16.3 5.9 1 23 512 534 512 534 0.98 4 19 0.00081 0.13 13.7 0.6 2 23 541 562 540 562 0.97 5 19 0.00084 0.14 13.6 1.8 2 23 601 622 600 622 0.96 6 19 0.0086 1.4 10.5 3.2 1 23 627 649 627 649 0.96 7 19 0.0017 0.29 12.7 0.5 1 21 655 675 655 679 0.92 8 19 0.0002 0.033 15.6 2.3 2 23 746 767 745 767 0.95 9 19 0.00019 0.032 15.7 5.0 1 23 819 841 819 841 0.97 10 19 0.00027 0.045 15.2 0.7 1 20 846 865 846 867 0.94 11 19 0.03 5 8.7 0.4 2 23 878 899 878 899 0.97 12 19 2.8e-05 0.0046 18.3 0.6 2 23 938 959 937 959 0.97 13 19 2.5e-05 0.0042 18.4 1.6 1 23 964 986 964 986 0.95 14 19 0.00015 0.026 16.0 1.2 1 23 992 1014 992 1014 0.98 15 19 7.7e-06 0.0013 20.1 0.4 1 23 1031 1053 1031 1053 0.95 16 19 1.4e-06 0.00024 22.4 0.3 1 23 1059 1081 1059 1081 0.99 17 19 2.7e-05 0.0045 18.3 0.3 1 23 1087 1109 1087 1109 0.98 18 19 0.00015 0.024 16.0 4.1 1 23 1115 1137 1115 1137 0.96 19 19 0.01 1.7 10.2 0.4 1 20 1143 1162 1143 1164 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGGTATTGATACGTCGGAGCCGTCACAGGATGATGAGCCTGTTGAATCGGCTATAGGAATATGTCGAGTTTGTTTACACGGGAACCTGATGATGAGGGATTTGTTTGGAGATAATGAGGTGGTCTCGCTGTCCAACAAGGCCATGAGCGTCGCCAGTGTTAAGATACTCCAAGGCGATGGTCTACCCAGCCAGGTCTGTTGCGACTGTGCTGCAAAGCTGGAGTCTGCCTACGACTTCAAGCTCCAGGTGGAGCAAGCCGATAACGTTCTCCGCGAGCGTTATGACAGCTTAAACATCAAAGAGGAGTTGTTCTTCAACGAGGTCGAAGTGCACCTGGAGAACGATCGTCACGAGGATGTTCCAGAGATCGATGTGGACGGTCAGTACGAAGCAGCAGCGGAGTCTATGAACATCTCCGTTGACCCTGACAAGGCCTCCCTCCTGAAGGATCATCTGGCGCTCCTCGAAGTTGAAAAGCTCGGCGAACACGATTCCCACGTTCTGGACCATTCCCCAATGATCCACGATGACTCTCACTCTTCTCAACTCACCCACCACCAGATCCACGAGTCCTCCCTCAAGGAAACAATCCTTCAGTCTCAAGAGGTCTACCTCGATGAGCCCTCGGAAACCGCTGCCCACGAGATCCTCATGTCCCCTGACACTGAGGTCGTGAAGAGCGAAGCCCTCAATCCAGGTGAAATGACAATCGACGAGCACAACTACATGATTCAGCAGGGTTACAGTCTGACTACCGAACAGGAGCAGGCACTGATGCAACAGGATAACGACGACAATGGCTCCCAGGACTTCCCCACTCTAATGCTGGAGGACGAAGATCCTGAGGAGATCGAAGCAGCTGAGGACGAAGTTACTGAGGAACAAGAGCAAAATCTCGAACAGGTCCACCAAGAACTGGAGCTACCCCAAATCTCTCTGgaatccaaaccacaaaaGGCTGAATTCCACCACGAGGAAGTCTCTCCACTCTCGAAATCCAAAAGAACGCGAAAAGACTCAGACCAAAACTCGTCAGAGGACAATTACTTTGAGAATCTCAATCTGAGCAGTAGACTGAAACAGTTCGACGAAGACAGATCAGACAAAGTATTCTTCATGTGTTACCTCTGCGATAAACAATTTGTATCCAAAGAGATCCTAAAAGAGCACATGCACTCTCACGAAGAAGTTCGTAAGACACtatctttgaaaaaaactccGGAGAAGGTGCAGAAGCACCTTCACACTCCAAGTGCCAAGTCTCAGCCATCGGGAAAGAAAGCGAACAAGTGTCCCTACTGTGGGAAAGAGTACCTCTACGTGATCTCCTTCAACAAGCACATCAAGCAACACGAAAAGAACGAAGACGAGTTGAAACACGAGTCAAACTTGGAGGAATCGGACTCTGAAGGCTTCGACAATAATGACACCTTCGAGGTGATCCACGACGACAGACCGGAATCTCCGAATGCCTCAGCTAGCTCTATGAAGTTCGAAGTATCAGAATCGACTCAGGAGATCTTCCCCTGCACGAAGTGTCACGAAAAGTTCCCATCTAAAACAGATCTCCAACGTCACACTCGCCATCACAATCAGACAGAAGCAGTGAGATGTAATATCTGTTCCTTGGAATTCGAGTCATCAGAAAAACTCAAAGACCATCGTTCGACGCACGTTATAGAGGGCGTCCTCACCGAGCAAGAACTCCGAGACGAACTCTCCAACATCTGTACCAAGGAGTACGAGGAGAACTGCTTGAACAACCTTGACCCAGATGGCAACGACTTGAAGTGTCGAAACTGCTCCATGACCTTCATGTCGAAGAAGCTTCTGATAAAACACATGGACTCGCACGAGAGAACCAAGTACAGATGCAAGCTCTGCATTCAAGAATTTACGAAGAAGGATCACCTGAGAAAGCACGCCGAGCAGCACGCAAAAGTCAAGTCTTTCAAGTGCACCCAGTGCAGCAAAGTTTTCGGCAATGAACTCACTCTCCGAAATCATCTGATCGCAACGAATCACAAGACGATACATCAAGGGGAGGAGTACGATCCCAACAAGAGGATAAAACGGGTGGCAGCCAAAGCTGCCCAGAAGATAATAGACAAGATTAAAACCGAGGACGGACTAGAAGATTCAGACCAAGAAGACGGTGAGGAGTTTGCGGAGGAGCAGAAGTCCAACGACAAACTCTCGAAGCGAACATCACGAAAAGACTTGGAGTGCGCCACGTGTGGTAAAAAATGCAGTTCCAAGCAGTATTTACTTCGACACATGGAGCAGCACTCGAAGGAAGAAAAGTCAGAGGTAAATCCATCAAAGACTAAGTCGAACGATCTGAATTCATTGCAGAGAATCGGTGGAGTTGGCTTCGACCGAGACTTCGATGACAACTCCGATGATGACTTTGAGAGTGGTTTGGACTGGCCGATGGACACTCACGAGTGTACAACCTGTAAGAAGCGTTACAGCACGAAAAAGTCGTTGCTGAGACATCAACTGCTTCACGAAGAACCCAACTTCGAGTGCGACATCTGCAACGTCAAATTCTACAGAAAGGACAAGCTCAAAGCTCACTACGACAAGTGTTCTGAGAAGAATCCCGACCAAGTGCGGAAATGCAACATCTGCGGGGATACCTTCGAGAACAACGACATTCTGAAGGAGCATCGTGCAAAGCACGTGGACGAGGGAATCCTTACTGAGGAGGATCTGAGAGAACTCGAGCCCAGCAGTGAGGATCGCAAGTCAGGCGAGAAGATCGCGAGAAAACGGCGGACCGATATCGTTGGACTGGAGTGCACAGAGTGTAACAAGCAGTACACCTCCAGAAAAGGATTACTGAGGCACATTCAGGTGCACGAGGGAAAGAAGTATCTCTGCGACATATGTCCTAAGAAATTCTACAGACGAGAACACCTGAAGATTCATGTGGCCAAGCACAACATGGTGAAGCCATACAAATGCACAAGGTGTTCCAAGAGATTTATCAAGGAAGAGCAGTTGGCTGCACACTTGACCAAACACGAGAGAACCTTCAAGAAGAACAAGGAGACTGATTCCACATCGAAGAGATTCCTCTGTGAAATTTGCTCCAAGAGTTTTACGCAGTCGACAACTCTCGTAGCTCATCTCAGAGCGCACAATGGAATCAAGCCTTACGTGTGTGAAGTTTGTGCAAGACCTTTCACTACGAATGCGTATCTGAAGATGCACATGAGGACGCACACACAGGAGAGGCCCTACAGCTGTCAGTACTGCTCGAGGGCATTCGCCAGGGCTGACACTCTGGCTAATCATCTCACTTCTCACACTGGCGAGGCCAAGTACCACTGTAAATACTGTCCCAAGAACTTTAGGAGGTTGAAGTCGTTGAAGGAACATGTGTTCATTCATACAGGACAGAGGCCCTACGCCTGTCCCACTTGCGATCGAAGGTTCAATAATAATGGCAGTAGGTATGCACACTCGAAGAGGTGTAAACAAAATCTCCTGCAGAATCAGGCGAGGCAGGGGCAGGGGCAGGGACAGGTGCAAGTACAAAGTCAGGAGATTCAGGCGGTTGTGATTGATAATCAGGGGGTGCAGGAGATTCACGAGGTACAACAGGTTCAGACTGTCCAGCAGATCCAACAGGTACATATTCAACCGCAGAATCAGGGACAGACCATCAGATTGGCTCAGGCGATGGGACCTACGATGCAGGTTGTGCAGAATAAGAATATCAAGACGATTACTATTACCAGGCAACCTGACCACGTTGGGCATCAAGTCATTCAGCATCAGGAGATTCTTATGCCGTTGATATTGCCTCTGACGGTTACACTGACTGACGTGGATGATGAGGTGATACTGCCTGAGGGGACTAAGATTTTTACGACTACGTAG
- Protein Sequence
- MDAVGIDTSEPSQDDEPVESAIGICRVCLHGNLMMRDLFGDNEVVSLSNKAMSVASVKILQGDGLPSQVCCDCAAKLESAYDFKLQVEQADNVLRERYDSLNIKEELFFNEVEVHLENDRHEDVPEIDVDGQYEAAAESMNISVDPDKASLLKDHLALLEVEKLGEHDSHVLDHSPMIHDDSHSSQLTHHQIHESSLKETILQSQEVYLDEPSETAAHEILMSPDTEVVKSEALNPGEMTIDEHNYMIQQGYSLTTEQEQALMQQDNDDNGSQDFPTLMLEDEDPEEIEAAEDEVTEEQEQNLEQVHQELELPQISLESKPQKAEFHHEEVSPLSKSKRTRKDSDQNSSEDNYFENLNLSSRLKQFDEDRSDKVFFMCYLCDKQFVSKEILKEHMHSHEEVRKTLSLKKTPEKVQKHLHTPSAKSQPSGKKANKCPYCGKEYLYVISFNKHIKQHEKNEDELKHESNLEESDSEGFDNNDTFEVIHDDRPESPNASASSMKFEVSESTQEIFPCTKCHEKFPSKTDLQRHTRHHNQTEAVRCNICSLEFESSEKLKDHRSTHVIEGVLTEQELRDELSNICTKEYEENCLNNLDPDGNDLKCRNCSMTFMSKKLLIKHMDSHERTKYRCKLCIQEFTKKDHLRKHAEQHAKVKSFKCTQCSKVFGNELTLRNHLIATNHKTIHQGEEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDSDQEDGEEFAEEQKSNDKLSKRTSRKDLECATCGKKCSSKQYLLRHMEQHSKEEKSEVNPSKTKSNDLNSLQRIGGVGFDRDFDDNSDDDFESGLDWPMDTHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNDILKEHRAKHVDEGILTEEDLRELEPSSEDRKSGEKIARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCSKRFIKEEQLAAHLTKHERTFKKNKETDSTSKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQARQGQGQGQVQVQSQEIQAVVIDNQGVQEIHEVQQVQTVQQIQQVHIQPQNQGQTIRLAQAMGPTMQVVQNKNIKTITITRQPDHVGHQVIQHQEILMPLILPLTVTLTDVDDEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438249;
- 90% Identity
- iTF_01273254;
- 80% Identity
- -