Csp013479.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- -
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000009.1:6187852-6192052[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.9e-05 0.0065 17.3 3.5 1 23 386 408 386 408 0.97 2 19 0.011 1.2 10.2 0.9 2 23 442 463 441 463 0.97 3 19 0.002 0.22 12.5 5.3 1 23 521 543 521 543 0.94 4 19 0.00083 0.091 13.7 1.4 2 23 550 571 550 571 0.98 5 19 0.0023 0.25 12.3 2.2 2 23 610 631 609 631 0.96 6 19 0.00041 0.044 14.7 2.6 1 23 636 658 636 658 0.96 7 19 0.00021 0.023 15.5 0.4 1 21 664 684 664 688 0.91 8 19 0.00014 0.016 16.1 1.8 2 23 754 775 753 775 0.95 9 19 0.00046 0.05 14.5 4.1 1 23 827 849 827 849 0.96 10 19 0.00028 0.031 15.2 0.7 1 20 854 873 854 875 0.94 11 19 0.049 5.4 8.1 0.3 2 23 886 907 886 907 0.97 12 19 2.9e-05 0.0031 18.3 0.6 2 23 946 967 945 967 0.97 13 19 2.6e-05 0.0029 18.4 1.6 1 23 972 994 972 994 0.95 14 19 0.00012 0.013 16.3 1.2 1 23 1000 1022 1000 1022 0.98 15 19 7.9e-06 0.00087 20.0 0.4 1 23 1039 1061 1039 1061 0.95 16 19 1.5e-06 0.00016 22.3 0.3 1 23 1067 1089 1067 1089 0.99 17 19 2.8e-05 0.003 18.3 0.3 1 23 1095 1117 1095 1117 0.98 18 19 0.00049 0.054 14.4 5.9 1 23 1123 1145 1123 1145 0.96 19 19 0.011 1.2 10.2 0.4 1 20 1151 1170 1151 1172 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGGTATTATTGATACGTCGGAGCCGTCACAGGATGATGAGCCTGTTGAATCTTCTGTGGGAATATGTCGGGTTTGTTTACACGGAAATCTCATGATGAGGGATTTGTTTGGGGAGAATGAGGTGATTTCACTGTCCAGTAAGGCTATGAGCTTCGCCAGTGTTAAGATGATCCCAGGTGATGGTCTCCCCGATCACGTCTGCTGTGACTGTGCGGACAAGCTGGAGTCTGCCTACGACTTCAAACTCCAAGTAGAACAGGCTGACAATGTTCTCCGTGAGCGTTACGACAGTCTGAATATCAAAGAAGAGCTCTTCTTCAACGAAGTCGAAGTCCATCTAGAGAATGATCGTCACGATGATGTACCAGAGATCGACGTTGATGCTCAATACGAGGCAGCAGCAGACGTTTTAGATGTCTCCACATCCCATGAAAAATCCTCTCTATTGAAAGATCACTTGGCTCTCTTAGAGGTACAAAAACTCGCTGAACAAGAGCACCACGTGAACGTCATGAATCACTCCCCCATGATTCAGGAATCACACTCTCCACAAATCCCTCACCACCCATCCCAAGAATCCCCACATCTCCTTCAACCCCAAGAGAACTACCTTCACGAGCCATCAGAAGCCTCTCCTCACCAAATCCTCATTTCCCAAGATCATGAAAACGTTAAATCTCAGAGTCTAAATCCAACAGAAATGACAATAGACGAACACAACTACATCGTTCCACCAGGCTACACTCTAACAAACGAACAAGAGCAGGAATTGATGCAACaggataatgatgaaaatggcTCTCAGGAGTTTCCTACATTGATGTTGGATGATGAAGATCCTGAGGAGGTTGAAGCTGCTGAGGATGATGCTCATGAACAGGAAATTGATCAAGAATTGGTGCAGGAACTTGAGCAACCTCAGGAGTCCATTGAACCACAACAACTGGAACAAGAACATGAAGTTGAGCAAGAACAAGAACAAGAACAACCTGAGTCTATTCCAAATCCAGAAACCGCACCACCAAAACCGAGAAGAACTAGACAAGACTCAGATCAGATTTCAGATGAGGAGAATTActttgaaaatctcaacttGAGTAGTCGACTCAAACAATTTACTGACGACAAATcagataaaatatttttcatgtgtTACCTCTGcgataaaaaatttgtgtCTAAGGAGACCTTGAAAGAGCACATGCACTCGCATGAAGAAGTACGTAAGACATTGTCACTGAAGATGACCCCAGAGAAGACTCAAAAGACATTGAGTCCTGTGAAATCTCAGCCTTCAGGAAAGAAAGCTAACAAGTGTCCCTATTGTGGCAAAAAGTATCTTTATGTTATCTCATTTAATAAACATATTAAACAGCATGAGAAGAATGAAGACGAACCGAAAATAGAAACCTTTGAGGATGAAGAATCAAACACTGATGGTTTTGATAATACAGACACTTTCGAAGTGATTCACGACGACAGACCAGAATCTCctgaagaattgaataattccatGAAGATGGGAGGACTGAATTCATCTCAAGAGATCTACAATTGCACAAAATGCCACGAGAAATTCCCTTCAAAAACTGATCTTCAACGTcacaatattcatcataatCAGAGTGAACCCGAGAGATGTAATATTTGTTCCTTGGAATTTGAATCttcagagaaattaaaaaatcatcgtTCAACTCATGTTATGGAAGGAGTACTTTCTGAACAAGAATTACGAGACGAGTTGTCCAACATGTGTAGCAAAGAGTACGAGGAGAATTCTTTgaacaatattgatgaaaataacaaatatctAAAATGTACACATTGTGCTATGGCTTTCATGTCGAAGAAGCTCTTAATGAAACACATGGATTATCACAAACGTACCAAATACAGATGCAAGCTATGCACTCAAGAATTTGTCAATAAAGATCTCTTGAAAAAACACGCTGAGCACCACACAAAGACAATATCTTTCAATTGCACTCAATGCGGCAAATTCTTTATTAATGAACTAAATCTTCGAAATCATCTGATAGCTATGAATCATAAAACGATACTTCAAGGAGAGGAGTATGATCCAGATAAGAGGATAAAAAGAATTGCTGCAAAAGCTGCTGAAAAGATTATTGATAAGATAAAAACAGAGGATGGATTAGATGACTCTGAACAAGATACTGAGGACTTTGATGAGGaccaaaaattaaatgataaagTATCAAAGAAATCTAATAAGAGAGAATTGGAGTGCGCAACATGTGGAAAAAGATGCAGCTCAAAACAATATTTACTTCGTCATATGGAGTTGCATTCAAAAGAGGACAAGCCGGAAgtcaatcaattgaaaacaaaGCAGAATGATCTTAATTCTCTCCAGAGAACTTGTATTCCCTTTGGAGATCGAGAGTTTGATGATaattctgatgatgattttgaaagTGGATTGGACTGGCCAATGGACACTCATGAGTGTGTAACCTGCAAGAAGCGTTACAGtactaaaaaatcattactaCGACATCAATTGTTGCACGAAGAGCCTAATTTTGAATGCGATATCTGTAATGTCAAGTTTTATCGTAAAGACAAACTCAAAGCCCATTATGATAAGTGCTCTGAGAAGAATCCAGATCAGGTGAGAAAGTGTAATATTTGTGGTGAtacatttgaaaataatgagataTTGAAAGAACACAGAGCGAAACATGTGGATGAGGGAATATTAACTGAGGAAGATTTGAGAGAATTGGAGCCAGGTTCTGAGGATCGTAAATCAGGTGAGAAAATTGCAAGAAAACGAAGGACAGATATAGTAGGATTAGAGTGTACTGAATGTAACAAACAATATACATCACGAAAAGGATTACTGAGACATATTCAGGTGCATGAAGGGAAAAAGTATCTCTGCGATATTTGTCccaagaaattttacagaCGAGAGCACTTGAAGATTCATGTGGCTAAACATAATATGGTTAAGCCTTACAAATGCAACAGATGTTCCAAAAGATTTATCAAAGAGGAACAATTGGCTGCCCATTTGACTAAGCACGAGAGaacctttaaaaaaaataaagaaactGATTCCACTTCCAAAAGATTTCTCTGTGAAATTTGCTCCAAAAGTTTTACACAATCTACAACATTGGTTGCTCATTTGAGAGCACATAATGGTATTAAACCGTACGTTTGTGAAGTTTGTGCAAGACCTTTTACAACAAATGCATATTTGAAAATGCATATGAGAACTCATACCCAAGAGAGACCCTACAGCTGTCAGTATTGCTCGAGGGCTTTTGCAAGGGCTGATACACTTGCTAATCATCTTACTTCGCACACTGGAGAGGCAAAGTATCATTGTAAACACTGTCCTAAGAATTTTAGAAGGTTGAAATCACTGAAGGAACATGTGTTTATTCATACTGGACAGCGGCCCTATGCTTGTCCCACTTGTGACAGGAGgtttaataataatggaaGCAGATATGCGCATTCTAAGAGGTGTAAGCAGAATTTATTGCAGGGTGGTGGTCGGCAGACACAAGGGCAAGTACAAGGACAAGAGCAAGCACAGGTACAAGTACAAAGTGAGATTCAGGAGATTCAGGGAGTTGTAATTGATGAGCAAGGTACAGTGCAACAAGTGCAGGTTCAGCAGGTTCAACAGGTTCAGGGGGTTCAACAGGTACAACAGATGCAGATTCAAGGGCAGAATCAAGGACAGACTATCAGATTGGCGCAGGCTGTAGGACCTACTATGCAGGTTGTCCAGAGTAAGGGGATTAAGACTATTACAATCACTAGACAAGCTGATCAGGTTATGCAGCATCAGGAGATTCTTATGCCATTGATTTTACCGTTAACGGTGACTTTGACTGATGTCGATGAGGAGGTGATACTGCCTGAGGGTACCAAGATTTTTACGACTACGTAG
- Protein Sequence
- MDAVGIIDTSEPSQDDEPVESSVGICRVCLHGNLMMRDLFGENEVISLSSKAMSFASVKMIPGDGLPDHVCCDCADKLESAYDFKLQVEQADNVLRERYDSLNIKEELFFNEVEVHLENDRHDDVPEIDVDAQYEAAADVLDVSTSHEKSSLLKDHLALLEVQKLAEQEHHVNVMNHSPMIQESHSPQIPHHPSQESPHLLQPQENYLHEPSEASPHQILISQDHENVKSQSLNPTEMTIDEHNYIVPPGYTLTNEQEQELMQQDNDENGSQEFPTLMLDDEDPEEVEAAEDDAHEQEIDQELVQELEQPQESIEPQQLEQEHEVEQEQEQEQPESIPNPETAPPKPRRTRQDSDQISDEENYFENLNLSSRLKQFTDDKSDKIFFMCYLCDKKFVSKETLKEHMHSHEEVRKTLSLKMTPEKTQKTLSPVKSQPSGKKANKCPYCGKKYLYVISFNKHIKQHEKNEDEPKIETFEDEESNTDGFDNTDTFEVIHDDRPESPEELNNSMKMGGLNSSQEIYNCTKCHEKFPSKTDLQRHNIHHNQSEPERCNICSLEFESSEKLKNHRSTHVMEGVLSEQELRDELSNMCSKEYEENSLNNIDENNKYLKCTHCAMAFMSKKLLMKHMDYHKRTKYRCKLCTQEFVNKDLLKKHAEHHTKTISFNCTQCGKFFINELNLRNHLIAMNHKTILQGEEYDPDKRIKRIAAKAAEKIIDKIKTEDGLDDSEQDTEDFDEDQKLNDKVSKKSNKRELECATCGKRCSSKQYLLRHMELHSKEDKPEVNQLKTKQNDLNSLQRTCIPFGDREFDDNSDDDFESGLDWPMDTHECVTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILKEHRAKHVDEGILTEEDLRELEPGSEDRKSGEKIARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCNRCSKRFIKEEQLAAHLTKHERTFKKNKETDSTSKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKHCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQGGGRQTQGQVQGQEQAQVQVQSEIQEIQGVVIDEQGTVQQVQVQQVQQVQGVQQVQQMQIQGQNQGQTIRLAQAVGPTMQVVQSKGIKTITITRQADQVMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438249;
- 90% Identity
- -
- 80% Identity
- -