Fari001457.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- -
- Assembly
- GCA_000806365.1
- Location
- NW:63830-69481[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0054 0.37 10.6 2.1 1 23 378 400 378 400 0.97 2 19 0.026 1.8 8.4 0.5 2 23 435 456 434 456 0.95 3 19 0.00087 0.059 13.1 7.6 2 23 514 535 513 535 0.96 4 19 0.0024 0.16 11.7 0.9 2 23 542 563 542 563 0.98 5 19 0.019 1.3 8.9 2.6 2 23 601 622 600 622 0.96 6 19 0.00018 0.012 15.2 4.1 1 23 627 649 627 649 0.96 7 19 0.0012 0.078 12.7 0.5 1 21 655 675 655 679 0.92 8 19 9.6e-05 0.0065 16.1 1.8 2 23 747 768 746 768 0.95 9 19 0.00013 0.0091 15.6 5.0 1 23 820 842 820 842 0.97 10 19 0.00019 0.013 15.2 0.7 1 20 847 866 847 868 0.94 11 19 0.021 1.4 8.7 0.4 2 23 879 900 879 900 0.97 12 19 1.9e-05 0.0013 18.3 0.6 2 23 939 960 938 960 0.97 13 19 1.8e-05 0.0012 18.4 1.6 1 23 965 987 965 987 0.95 14 19 0.00011 0.0073 15.9 1.2 1 23 993 1015 993 1015 0.98 15 19 5.3e-06 0.00036 20.0 0.4 1 23 1032 1054 1032 1054 0.95 16 19 9.9e-07 6.7e-05 22.3 0.3 1 23 1060 1082 1060 1082 0.99 17 19 8e-05 0.0054 16.3 0.2 1 23 1088 1110 1088 1110 0.98 18 19 0.0001 0.0069 16.0 4.1 1 23 1116 1138 1116 1138 0.96 19 19 0.0072 0.49 10.2 0.4 1 20 1144 1163 1144 1165 0.89
Sequence Information
- Coding Sequence
- ATGGATGCCGTGGATATCGATACGCCGAAGCCGTCACAAGATGATGAGCCTGTTGAATCCGTTGTGGGAATATGTCGGGTTTGTTTACACGGCAATTTGATGATGAGAGATCTCTTCGGGGATGATGATGATCTCTCTCTGTCCAGCAAGGCCATGAATTTTGCAAGTGTCAAGatGATGCCAGGGGATGGTCTCCCGACTCAAGTCTGTTGTGACTGCGCTGAGAAGCTCGAATCAGCGTTCGAGTTCAAACGCCAAGTAGAGCAGGCAGACAACATCCTCCGAGAGCGTTACGACAACCTCACCATCAAGGAAGAGCTCTTCTTCAATGAGGTTGAAGTTCACCTGGAGAACGATCGACACGAGGACGTGCCAGAGCTCGACGTGGACAGCCACTACGATGAAGCACCAGAAACTCCAAACGTCTGCGACCCGGAGAAGTCCTCTCTCCTGAAAGACCACTTGGCCCTCCTGGAGGTGGAGAAATTGGCTGAACAAGAGCAACACGTGCTCGAGCACTCGACAATGATCCAAGAGGACACACTTCCCGCTCAACTCACGCATCACCCAATTTCCGAATCTCCCCTGAAGCAACCCCTTCTCCAACCCCAAGAGGACTACCTCCACGAGCCCTCCGAAACCTCCGGCCACCAAATCCTCATCACTCGTCACCACGACGACAACGTGAAGACAGAGAGTCTCAACCCTGGAGGAATGACCATCGACGAGCACAACTACATGGTCCAGCAAGGCTACACCCTGACAAACGACCAGGAACTGATGCAACAGGATGCCGATGACAATGGCTCCCAGGATTTCCCGACGTTGATGCTGGAGGACGAGGATCCAGAGGTTGTGGAAGCAGCCGAGGACGAGGCCAACGAGCAGGAACTTGACCATGAGCAGGATCAACAGCTTCGTCAAGCCCTGCATCAACGTCAAAATTCCCTCAACCCTAAACCACTAGAGCCTGAATCCTTAGAAGTCCTGGAAACTGAGATCTCGCCCTCGAATTCCAAACGATTGCGTAAAGACTCAGATCAAAATTCCTCGGAAGACAATTACTTTGAGAATCTCAACTTGAGCAGCAGATTGAAGCAGTTCGAGGAAGAAAAATCggataaaatattcttcatgtGTTACCTCTGCGACAAACAATTCGTATCAAAAGTTATTTTAAAAGAGCACATGCATTCGCACGAGGAAGTTCGTAAGACGCTGTCCCTGAAGAAGACCCCGGAGAAGTCTCAGAAGGTACAGACACCCAGTGGCAAGTCCCAGCCATCTGGGAAGAAAGCCAATAAGTGTCCCTACTGCGGGAAAGAATATCTCTATGTAATTTCGTTCAGTAAACACATCAAGCAACACGAGAAGAATGACGACGAGTTGAGGCACACGTCGAATATCGAAGATGACTCGGGCTCTGATGGTTTTGACAACACAGACACCTTCGAGGTGATCCACGACGATAGACCAGACTCCCCGGATCACCACGATCATCCCACAATCGAAGGATTGGATTCATCACAAGAAATTCTCTCCTGCACGAAATGCCACGAGAAATTTCCATCGAAGACAGATCTCCAACGTCACATGCACCATCACAATCAAACAGAAACCGAAAGATGCAATATTTGCTCGTTAGAATTTGATTccttagaaaaattgaaggaccATCGGTCCACCCACGTGATGGAGGGCGTCCTCACGGAACAAGATCTTCGAGACGAGCTGTCCAACATTTGTACAAAAGAGTACACAGAGAAATCCAACAAGGTAGACCCAAATGACAAGGACTTGAAGTGTCGAAGTTGCTCCATGACGTTCATGTCGAAAAAACTCCTCATGAAACACCGGGATTCCCACGAACGCACGAAATACAGATGTAAGCTCTGCACTCAAGAATTCACGAAGAAAGATCACTTGAGAAAACATGCGGAGCAGCACTCGAGGGTGAAGTCCTTCAAGTGCACTCAGTGCACCAAAGTCTTTGGTAATGAGCTCACCCTTCGAAATCATTTAATCGCGACTAATCACAAGACGATACACCAGGGGGAGGAGTACGATCCCAATAAAAGGATAAAGCGTGTGGCAGCCAAAGCTGCTCAGAAGATCATAGATAAAATTAAGACGGAGGATGGACTGGAGGATTCCGATCAGGAAGATACTGAAGACTTCAGTGAAGATCAGAGATCTTCCAGAGATGACAAGTCCAAACGAACCAATCGAACGGACTTGGAGTGCGCCACATGTGGCAAGAGATGCAGCTCCAAACAGTATCTTCTGCGTCACATGGAGCTCCACTCAAAGGACGAGAAATCGGATTACAATCAGTCCAAGGCCAAACAGAACGATCTGAGCTCATTCCAGAGAACCTGCGGAACTGGATTCGACAGAGAATTCGACGATAACTCTGACGATGATTTTGAGAGTGGACTGGACTGGCCAATGGACACTCATGAGTGCACCACCTGCAAGAAACGGTACAGtacgaaaaaatcattactccGACATCAACTGCTGCATGAAGAGCCGAATTTCGAATGCGACATCTGCAACGTAAAGTTCTATCGAAAGGACAAACTCAAGGCTCATTACGACAAGTGCTCTGAGAAAAATCCAGATCAAGTAAGAAAATGCAATATCTGCGGGGACACATTCGAGAACAATGATATCCTGAAGGAGCATCGAGCCAAGCACGTGGACGAGGGAATTCTCACCGAGGAAGACCTGCGTGAATTAGAGCCTAGCAGTGATGATCGTAAATCGGGTGAAAAAATCGCGAGAAAACGTAGAACAGACATCGTTGGACTAGAATGCACCGAGTGCAATAAACAATACACCTCTCGAAAAGGATTGTTGAGGCACATTCAGGTGcacgagggaaaaaaatacctGTGCGACATCTGCCCGAAGAAGTTCTACCGTCGTgagcatttaaaaattcacgtggCAAAACACAACATGGTAAAACCGTACAAGTGCACTAGGTGCTCTAAGCGATTCATCAAAGAGGAGCAATTAGCAGCGCACCTCACTAAACACGAGAGAACATTCAAGAAAAACAAGGAGACTGATTCCACCTCGAAGAGATTCCTCTGCGAAATTTGCTCCAAGAGTTTTACGCAGTCGACAACACTTGTCGCTCATCTGCGAGCGCACAATGGTATCAAGCCTTATGTGTGTGAAGTTTGTGCGAGGCCTTTTACGACAAATGCATACCTCAAGATGCACATGAGAACGCACACCCAGGAGAGGCCCTACAGCTGTCAGTACTGTGCAAGGGCTTTTGCCAGGGCTGACACTCTTGCTAATCATTTGACGTCACACACCGGTGAGGCGAAGTACCACTGTAAATACTGTCCCAAGAATTTCAGGAGATTGAAGTCCCTCAAGGAACATGTCTTCATTCACACTGGACAGAGACCCTATGCCTGCCCAACCTGTGACCGAAGGTTCAATAATAACGGGAGCAGGTATGCCCACTCGAAGAGGTGTAAGCAGAATTTACTGCAGAATCAGGCAAGGCAGGGACAGGCACAGGTGCAAGCTCAGGAGATTCAGGCAGTTGTTATTGATAATCAAGGGGTTCAGGAGATTCATGAAGTCCAGCAGGTGCAAACTGTTCAGCAGGTACAGACTGTACAACAGATTCAAACTGTTCAGCAGGTGCAGCAAGTACAGCAAGTGCAGCAAGTGCAGCAGGTGCAGATTCAACAGCAGAGCCAGGGGCAGACTATCAGGCTGGCTCAGGCTGTTGGTCCTACCATGCAGGTTgtgcagaataaaaatatcaaaaccaTTACCATCACCAGGCAGCCTGATCAAGTTGGTCATCAGGTTATTCAGCATCAGGAGATTCTCATGCCGTTAATTTTACCCCTGACTGTTACACTCACTGATGTTGATGAGGAGGTGATACTACCGGAgggaactaaaatttttacgaCTACGTAG
- Protein Sequence
- MDAVDIDTPKPSQDDEPVESVVGICRVCLHGNLMMRDLFGDDDDLSLSSKAMNFASVKMMPGDGLPTQVCCDCAEKLESAFEFKRQVEQADNILRERYDNLTIKEELFFNEVEVHLENDRHEDVPELDVDSHYDEAPETPNVCDPEKSSLLKDHLALLEVEKLAEQEQHVLEHSTMIQEDTLPAQLTHHPISESPLKQPLLQPQEDYLHEPSETSGHQILITRHHDDNVKTESLNPGGMTIDEHNYMVQQGYTLTNDQELMQQDADDNGSQDFPTLMLEDEDPEVVEAAEDEANEQELDHEQDQQLRQALHQRQNSLNPKPLEPESLEVLETEISPSNSKRLRKDSDQNSSEDNYFENLNLSSRLKQFEEEKSDKIFFMCYLCDKQFVSKVILKEHMHSHEEVRKTLSLKKTPEKSQKVQTPSGKSQPSGKKANKCPYCGKEYLYVISFSKHIKQHEKNDDELRHTSNIEDDSGSDGFDNTDTFEVIHDDRPDSPDHHDHPTIEGLDSSQEILSCTKCHEKFPSKTDLQRHMHHHNQTETERCNICSLEFDSLEKLKDHRSTHVMEGVLTEQDLRDELSNICTKEYTEKSNKVDPNDKDLKCRSCSMTFMSKKLLMKHRDSHERTKYRCKLCTQEFTKKDHLRKHAEQHSRVKSFKCTQCTKVFGNELTLRNHLIATNHKTIHQGEEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDSDQEDTEDFSEDQRSSRDDKSKRTNRTDLECATCGKRCSSKQYLLRHMELHSKDEKSDYNQSKAKQNDLSSFQRTCGTGFDREFDDNSDDDFESGLDWPMDTHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNDILKEHRAKHVDEGILTEEDLRELEPSSDDRKSGEKIARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCSKRFIKEEQLAAHLTKHERTFKKNKETDSTSKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCARAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQARQGQAQVQAQEIQAVVIDNQGVQEIHEVQQVQTVQQVQTVQQIQTVQQVQQVQQVQQVQQVQIQQQSQGQTIRLAQAVGPTMQVVQNKNIKTITITRQPDQVGHQVIQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438249;
- 90% Identity
- -
- 80% Identity
- -